Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k13
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    28   0.20 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   3.2  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    23   7.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    22   9.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    22   9.7  

>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 129 PSILINLFIFTVIL-KYM*FSNHN**KKILFDVGMNG 22
           P++L+ +F+  + L KY+ F+N +   ++LF +G  G
Sbjct: 72  PAVLLPVFVINIALFKYLVFANFSTKDRVLFGLGNGG 108


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 193 NHPPGWNLRSNF 158
           NHPP W   SNF
Sbjct: 275 NHPPWWRQLSNF 286


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 192 IIRXVGIYEAISXYKSVHFSKPSILINLFIFTVILKYM*FSNHN 61
           ++R     EAIS YK +   +P I  +  I  ++L     SN +
Sbjct: 293 LVRQNKFEEAISLYKKIIAKRPKIARDKKILNLLLYISTVSNRS 336


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 142  SFFKTVHIN*SVYFYCN 92
            ++FK+VH+N     +CN
Sbjct: 1457 NYFKSVHLNLLTAVFCN 1473


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 74  FQIIINEKRYSLMLG*TVQ 18
           F ++IN  RYS+ LG T++
Sbjct: 636 FTLVINRFRYSVDLGETLE 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,426
Number of Sequences: 5004
Number of extensions: 12092
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)