Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k13
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0736 + 6582371-6585370                                           26   4.9  
12_01_0718 + 6339982-6342981                                           26   4.9  
04_04_0004 - 22089250-22089582,22090050-22090325,22090626-220912...    25   6.4  

>12_01_0736 + 6582371-6585370
          Length = 999

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 45  LFDVGMNGARWCD 7
           + D+  NGARWCD
Sbjct: 208 MVDMSSNGARWCD 220


>12_01_0718 + 6339982-6342981
          Length = 999

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 45  LFDVGMNGARWCD 7
           + D+  NGARWCD
Sbjct: 208 MVDMSSNGARWCD 220


>04_04_0004 -
           22089250-22089582,22090050-22090325,22090626-22091282,
           22091367-22091603
          Length = 500

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 153 YKSVHFSKPSILINLFIFTVILKYM*FSNH 64
           YKS H +   +    F+ T   KYM  SNH
Sbjct: 340 YKSGHANLQYVTSASFLLTTFAKYMAVSNH 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,618,547
Number of Sequences: 37544
Number of extensions: 59035
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)