Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k13
         (196 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    27   1.8  
AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine re...    27   1.8  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    26   3.2  
Z81129-2|CAB03407.1|  315|Caenorhabditis elegans Hypothetical pr...    26   4.3  
AF098992-3|AAC67458.1|  323|Caenorhabditis elegans Hypothetical ...    26   4.3  
AF016449-6|AAG23999.1|  331|Caenorhabditis elegans Seven tm rece...    25   7.4  

>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 153 YKSVHFSKPSILINLFIFTVILK 85
           Y   HFS  SI INLF F ++++
Sbjct: 38  YFEPHFSAASIFINLFHFLILIR 60


>AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein141 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 153 YKSVHFSKPSILINLFIFTVILK 85
           Y   HFS  SI INLF F ++++
Sbjct: 38  YFEPHFSAASIFINLFHFLILIR 60


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 11   HHLAPFIPTSKSIFFH*L*FENYMY 85
            +H +PF+P   SIF H   F +Y+Y
Sbjct: 1155 YHDSPFLPPPFSIFAHVYHFIDYLY 1179


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 11  HHLAPFIPTSKSIFFH*L*FENYMY 85
           +H +PF+P   SIF H   F +Y+Y
Sbjct: 871 YHDSPFLPPPFSIFAHVYHFIDYLY 895


>Z81129-2|CAB03407.1|  315|Caenorhabditis elegans Hypothetical
           protein T23F1.4 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 178 WNLRSNFXL*ICSFFKTVHIN*SVYFYCNFKIHVIFKS*LMK 53
           W L ++F L   S   ++ ++ SV  YC  K+H+  K  L K
Sbjct: 191 WRLNNSFFL--LSGVVSIWLHYSVILYCGVKMHLNMKEELKK 230


>AF098992-3|AAC67458.1|  323|Caenorhabditis elegans Hypothetical
           protein F53C3.7 protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 13  PPCTVHPNIKEYLFSLIMI*KLHVF*NYSKNKQIN*YG 126
           PP  +H   K Y+F L++   L +     K+K  + YG
Sbjct: 35  PPIKIHIFAKNYIFCLVIFLTLRLKVKLQKSKMSHVYG 72


>AF016449-6|AAG23999.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 40 protein.
          Length = 331

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 27  SSQHQRVSFFINYDLKITCILKL 95
           S Q+ R  FF  YDL+IT + +L
Sbjct: 161 SDQYLRNEFFKEYDLEITNVARL 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,412,764
Number of Sequences: 27780
Number of extensions: 65190
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)