Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k12
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   3.8  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   6.6  
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    25   6.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.7  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 214 NTFVSPHCSPTDSLSNSSTICNEAT 140
           +TFV PH S TDS  + ST  N  T
Sbjct: 410 STFVRPHSSSTDSPPSPSTPSNTQT 434


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 474  VVDVYGLQQPRNTRWVVCSSN 412
            ++  YGL QPR+T W    +N
Sbjct: 1868 ILRTYGLMQPRDTNWTENGTN 1888


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 244 PQD*SRGYAS-NTFVSPHCSPTDSLSNSS 161
           P D S  + +     SPH SP DSL N S
Sbjct: 339 PSDVSASFLNLQAMPSPHASPKDSLINKS 367


>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 6/26 (23%), Positives = 18/26 (69%)
 Frame = +2

Query: 353 SVDIPQTILYFINFFLLLMWLDEHTT 430
           +++ P+ +++ +++ L  +W+D H T
Sbjct: 4   NIEFPKCVVFDLDYTLWPLWIDTHVT 29


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 399  YCLCGWTSTQPTWCYVVAGA 458
            Y + GW S   TW Y +A A
Sbjct: 1027 YHIRGWLSYAATWVYAIAAA 1046


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,738
Number of Sequences: 5004
Number of extensions: 58064
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)