Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k12
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AC024817-53|AAP13744.1|  549|Caenorhabditis elegans Hypothetical...    29   2.6  
AC024817-52|AAF59568.4|  611|Caenorhabditis elegans Hypothetical...    29   2.6  
AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81051-1|CAB02862.3|  677|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical...    28   6.1  
Z81506-9|CAB04132.2|  164|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81478-5|CAB03936.2|  164|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL110498-1|CAB54467.2|  187|Caenorhabditis elegans Hypothetical ...    27   8.1  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    27   8.1  

>U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical
           protein F14B8.7 protein.
          Length = 566

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 321 SAGQLYVEVG-LVWTSLKLFYIL*TFFYCLCGWTSTQPTWCYVVA 452
           S G LY+ +G +V+  + + Y L  F  CL GW+S +   C V++
Sbjct: 139 STGSLYLRLGCVVFGIIGVVYYLLIFVICLLGWSSNEGE-CSVIS 182


>AC024817-53|AAP13744.1|  549|Caenorhabditis elegans Hypothetical
           protein Y54G2A.26b protein.
          Length = 549

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 174 NESVGEQ*GLTNVLLA*PLDQSCGSRAPGRDTSPAAAPLHTTSKNDSTRSAGQLYVEVGL 353
           N + GE  G T   L    D S  S+  G   +  AAP+ ++  +D     GQ++ E+G 
Sbjct: 317 NANGGEYGGSTETTLLNLDDHSNSSKDYGMTPTTPAAPVASSVTSDLGGGGGQVFEEIGA 376

Query: 354 V 356
           +
Sbjct: 377 I 377


>AC024817-52|AAF59568.4|  611|Caenorhabditis elegans Hypothetical
           protein Y54G2A.26a protein.
          Length = 611

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 174 NESVGEQ*GLTNVLLA*PLDQSCGSRAPGRDTSPAAAPLHTTSKNDSTRSAGQLYVEVGL 353
           N + GE  G T   L    D S  S+  G   +  AAP+ ++  +D     GQ++ E+G 
Sbjct: 379 NANGGEYGGSTETTLLNLDDHSNSSKDYGMTPTTPAAPVASSVTSDLGGGGGQVFEEIGA 438

Query: 354 V 356
           +
Sbjct: 439 I 439


>AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical
           protein ZK250.6 protein.
          Length = 843

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -3

Query: 163 STICNEATVMQSAHSRSFYNRLHQYF*TINQSFHLPLKLVILTKHRIIVVH 11
           ST C E  + Q+  + S +    QYF  + + F++P ++ I   +  +V++
Sbjct: 563 STSCKEFAISQTVRNISQFLNGEQYFTDVEERFNIPWRIRIWRHNGYLVLY 613


>Z81051-1|CAB02862.3|  677|Caenorhabditis elegans Hypothetical
           protein C55A6.2 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 166 SYLMNPLGNSEG*QMCYSHNPSINPVGAGPPAATHR 273
           S L+  + +S G   C S NPS+N +  G P  + R
Sbjct: 79  SRLIRTMCHSHGFMQCSSKNPSVNVIWMGAPVKSVR 114


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
           protein F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 520 IVTTPTLPFKPKHIRY 567
           I+ T +LP+KPK+IRY
Sbjct: 210 IIWTTSLPYKPKYIRY 225


>AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical
           protein Y75B8A.19 protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 208 FVSPHCSPTDSLSNSSTICNEATVMQSAHSRSFYNR 101
           F+  +C+   +LSN+  +  E T+   AHS+++  R
Sbjct: 341 FIEAYCASLKNLSNTLYLLEEGTIELPAHSKNWTPR 376


>Z81506-9|CAB04132.2|  164|Caenorhabditis elegans Hypothetical
           protein F16H6.2 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +3

Query: 402 CLCGWTSTQP---TWC---YVVAGAHRHLQRGCATH 491
           C  GW   +    TWC   + + G+ +  Q GCATH
Sbjct: 23  CPTGWEEFERPSGTWCIKTFAIVGSWQDGQNGCATH 58


>Z81478-5|CAB03936.2|  164|Caenorhabditis elegans Hypothetical
           protein F16H6.2 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +3

Query: 402 CLCGWTSTQP---TWC---YVVAGAHRHLQRGCATH 491
           C  GW   +    TWC   + + G+ +  Q GCATH
Sbjct: 23  CPTGWEEFERPSGTWCIKTFAIVGSWQDGQNGCATH 58


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -1

Query: 567 VPNVFWLEG*GRRCNYTETLKLISQGGWRIRVVDVYGLQQPRNTRWVVCSSNHIS 403
           V N F +   G     T     I +G W+ +  D+    QPR  R  VC SN I+
Sbjct: 410 VKNGFHVLNSGEAIWLTNEANTICKGEWQAQTADLCPKAQPRPIR-PVCCSNEIT 463


>AL110498-1|CAB54467.2|  187|Caenorhabditis elegans Hypothetical
           protein Y64G10A.2 protein.
          Length = 187

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 231 DQSCGSRAPGRDTSPAAAPLHTTSKNDSTRSAG 329
           D S G+ APG+DTSP+ +  +  S+  ST  +G
Sbjct: 60  DGSGGTEAPGQDTSPSES-TNGNSEQSSTVGSG 91


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -1

Query: 567 VPNVFWLEG*GRRCNYTETLKLISQGGWRIRVVDVYGLQQPRNTRWVVCSSNHIS 403
           V N F +   G     T     I +G W+ +  D+    QPR  R  VC SN I+
Sbjct: 410 VKNGFHVLNSGEAIWLTNEANTICKGEWQAQTADLCPKAQPRPIR-PVCCSNEIT 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,369
Number of Sequences: 27780
Number of extensions: 343882
Number of successful extensions: 804
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)