Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k12
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 534 RRCNYTETLKLISQGGWRIR 475
           +RCN T     I   GW  R
Sbjct: 362 KRCNATGAFSWIGSDGWSAR 381


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 412 VGRAHNPPGVTWLLEPIDIYNADAPPTLRYK 504
           +G    PP   W  + +   NAD    +RYK
Sbjct: 98  IGVLRLPPDKVWKPDIVLFNNADGNYEVRYK 128


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 534 RRCNYTETLKLISQGGWRIRVVDVYGLQQ 448
           RR N ++  + ++  GW  ++  V GL++
Sbjct: 217 RRSNLSQPFQWLASDGWGRQIKLVEGLEE 245


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 223 NPSINPVGAGPPAATHRRPP 282
           NPS  P   GPP A   + P
Sbjct: 41  NPSQGPPPGGPPGAPPSQNP 60


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 534 RRCNYTETLKLISQGGWRIRVVDVYGLQQ 448
           RR N ++  + ++  GW  ++  V GL++
Sbjct: 307 RRSNLSQPFQWLASDGWGRQIKLVEGLEE 335


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 364 PSNYFIFYKLFFIAY 408
           P  YF+F   FFI Y
Sbjct: 471 PVAYFMFLTFFFIHY 485


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 364 PSNYFIFYKLFFIAY 408
           P  YF+F   FFI Y
Sbjct: 457 PVAYFMFLTFFFIHY 471


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 364 PSNYFIFYKLFFIAY 408
           P  YF+F   FFI Y
Sbjct: 491 PVAYFMFLTFFFIHY 505


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 364 PSNYFIFYKLFFIAY 408
           P  YF+F   FFI Y
Sbjct: 440 PVAYFMFLTFFFIHY 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,490
Number of Sequences: 438
Number of extensions: 3925
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)