Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24k09
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 30 0.33
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 28 1.00
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 3.0
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 26 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.0
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 4.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.3
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 5.3
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 7.0
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 25 7.0
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 7.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 7.0
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 7.0
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 9.3
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 29.9 bits (64), Expect = 0.33
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +3
Query: 249 SSEDPSSYRVPMSIGEGRTEHDKSGAPATAYDVAVNPEFFKKIEKDELFQTFFLTVVFEG 428
+ ++P S + E+ A + +FFK +EK+E + + +G
Sbjct: 659 NDKEPDSSSSTLISDRQELEYRNPNAETVKLEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
Query: 429 LQDKYQFEIDMQKFT-ILKNRKSI-GTLQSHRIQIRDIQQTESK 554
LQ +Y I Q + IL+N K + L+++ I + + SK
Sbjct: 719 LQ-RYTSMIGNQIYEGILQNEKELRSKLEAYHINCNKVIKEFSK 761
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 28.3 bits (60), Expect = 1.00
Identities = 14/66 (21%), Positives = 27/66 (40%)
Frame = +3
Query: 318 SGAPATAYDVAVNPEFFKKIEKDELFQTFFLTVVFEGLQDKYQFEIDMQKFTILKNRKSI 497
+G A YD + + F ++KD L + + + F DK ++ I R
Sbjct: 403 TGISAKEYDFSYDGTVFATVDKDALIKIYTVPTTFPSTPDKRPVPSEVSPIAIFTTRMER 462
Query: 498 GTLQSH 515
G +++
Sbjct: 463 GPSKNY 468
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 27 KNMRIVKETPVEGELKKLLSSVDTVPS 107
K+M + + P+EGE+++ ++S V S
Sbjct: 214 KSMAVYSDLPIEGEIRQFMNSTSKVMS 240
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 381 SQFS*RTLD*QPHRKQLPVHLIYHVQSDLPQYSWALC 271
S S + D P K+LP HL+ + QYS A C
Sbjct: 408 SSSSESSTDGNPQEKKLPEHLVKRKSRLVRQYSLAWC 444
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 181 FTNTFLLSGILVVLTQKPGVGLTSREGTVSTEDSNFFSSPSTGVSFT 41
FT+T+L SG V G T ST S ++S S+ S T
Sbjct: 963 FTSTYLSSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSSSSSSST 1009
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 551 TFCLLYISNLNPM*LQCSYGFPILQYCELLHIY 453
T + IS+L+P L+CSY L+H+Y
Sbjct: 89 TIAIRIISSLDPHGLRCSYAIQAKLLNWLIHVY 121
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +3
Query: 471 TILKNRKSIGTLQSHRIQIRDIQQTESKIKPPLIEEIKGKALSRSEAAHRKNEIV 635
T+ ++ S + + RD ++ + + PP+I +I + S + H K+ +V
Sbjct: 958 TLYRHNDSDASAYVSSARRRDFKEEKIESAPPIINDIDSEIASLKKRIHEKSLVV 1012
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 88 EDSNFFSSPSTGVSF-TILIFFSIIVGSTS 2
E +NFF+ TG SF IL+FFS++V S
Sbjct: 318 ETTNFFA---TGFSFFIILLFFSLLVAMAS 344
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 444 QFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQ 539
+ ++ Q+FT LKN K+I +L+S + D Q
Sbjct: 640 KLKLKYQQFTTLKNLKNIDSLESLELGHEDEQ 671
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 157 GILVVLTQKPGVGLTSREGTVSTEDSNFFSSPSTGVSFTILI 32
G +VLT TS +G+ S++ S + S GVS + ++
Sbjct: 480 GSSLVLTASASPSSTSVDGSSSSDSSEASGAASVGVSISAIV 521
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 378 EKDELFQTF---FLTVVFEGLQDKYQFEIDMQKF 470
EKDE T FL F G QD+ F+I M+ F
Sbjct: 656 EKDEERLTVISEFLKSCFSGCQDRRSFQITMEDF 689
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 301 GLNMINQVHRQLLTMWLSIQSSSRKLRKMNFSKHF 405
G N I + +LLT+WL + +L K + K+F
Sbjct: 1831 GTNHIYESMPKLLTLWLDFGAEELRLSKDDGEKYF 1865
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 432 QDKYQFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQQTESK 554
Q K++ ++KF +S+ + R+ + DI+Q E+K
Sbjct: 473 QSKFEAVNQLKKFLGSLGNRSLNAREPLRVTLEDIEQIETK 513
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 483 NRKSIGTLQSHRIQIRDIQQTESKIKPPLIEEIKGKALSRSEAA 614
N KSI H + ++ + SKI + +E +LS+S++A
Sbjct: 208 NTKSIREEPIHHVDSKNEEPVYSKIPEKMGDEFSENSLSKSDSA 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,248
Number of Sequences: 5004
Number of extensions: 63930
Number of successful extensions: 216
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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