Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k09
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74031-4|CAA98456.4|  291|Caenorhabditis elegans Hypothetical pr...    81   5e-16
AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear recep...    28   4.9  
AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm rece...    28   4.9  
AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormo...    28   4.9  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z74031-4|CAA98456.4|  291|Caenorhabditis elegans Hypothetical
           protein F32D8.4 protein.
          Length = 291

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 17/191 (8%)
 Frame = +3

Query: 111 LVKPTPGFCVKTTRIPDN-------KKVFVNICQTDAIPCP-RDITNDELMYILSSEDPS 266
           L+KP PG+  K   +  N       +K FVN+C  + +P P  D   DE+   L + +PS
Sbjct: 15  LIKPLPGYVCKWKDVKINGIVNDEYRKCFVNVCHCEQLPPPIDDFDQDEIAAQLDAGNPS 74

Query: 267 SYRVPMSIGEGRTEHDKSGAPATAYDVAVNPEFFKK---IEKDELFQTFFLTVVFEGLQD 437
            +R+PMS+GE     D S   +   DV VN  F+KK      D  F+     +  + ++D
Sbjct: 75  -FRIPMSVGEIDCVKDHSDENSIKIDVLVNSTFYKKRLASPNDAFFRHLLCLIFCDLVKD 133

Query: 438 KYQFEIDMQKFTILKNRKSIGTLQSHRI------QIRDIQQTESKIKPPLIEEIKGKALS 599
           ++  ++D  K  +L+NR S+G L+  +I      QI +    E K++   +E+ + K + 
Sbjct: 134 RHSIDLDPLKPIVLRNRVSVGELEVQKIHKKPEKQIVEEMYQEDKVR---MEKEEKKQVG 190

Query: 600 RSEAAHRKNEI 632
             + A  KNE+
Sbjct: 191 NDDVAEMKNEM 201


>AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear receptor
           NHR-88 protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 216 DITNDELMYILSSEDPSSYRVPMSIGEGRTEHDKSGAPATAYDV 347
           D+T+ E + +  +E PSS   PM IG   T    + A   A D+
Sbjct: 462 DVTSSEFVKMEQNESPSSSEEPMCIGAPATSSANAVATNLAADL 505


>AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm
           receptor protein 39 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 390 LFQTFFLTVVFEGLQDKYQFEIDMQKFTILKNRK 491
           L  + +L +V+ GLQ  +Q + ++QKF++  NRK
Sbjct: 206 LLSSQYLIIVYCGLQMHFQMQKELQKFSV-ANRK 238


>AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform a protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 216 DITNDELMYILSSEDPSSYRVPMSIGEGRTEHDKSGAPATAYDV 347
           D+T+ E + +  +E PSS   PM IG   T    + A   A D+
Sbjct: 457 DVTSSEFVKMEQNESPSSSEEPMCIGAPATSSANAVATNLAADL 500


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 487 LFFNIVNFCISISN*YLSCNPSNTTVRKNVW 395
           +F N+ + CI+  N    CNP +T +RK ++
Sbjct: 790 MFANVKSACINSLNGTAWCNPYSTNLRKAIY 820


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,795
Number of Sequences: 27780
Number of extensions: 356787
Number of successful extensions: 1112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)