Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k09
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   4.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 584 FNFLNKWRFDFTFCLLYIS-NLNPM 513
           ++ +N+W +  T CL Y S  +NP+
Sbjct: 290 YDDINQWVYPLTGCLYYFSTTINPI 314


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 575 LNKWRFDFTFCLLYIS-NLNPM 513
           LN+W +  + CL Y S  +NP+
Sbjct: 305 LNEWLYILSGCLYYFSTTINPI 326


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 162 NKKVFVNICQTDAIPCP 212
           NKK++ NI   + IP P
Sbjct: 109 NKKLYYNIINIEQIPVP 125


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 162 NKKVFVNICQTDAIPCP 212
           NKK++ NI   + IP P
Sbjct: 109 NKKLYYNIINIEQIPVP 125


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 162 NKKVFVNICQTDAIPCP 212
           NKK++ NI   + IP P
Sbjct: 329 NKKLYYNIINIEQIPVP 345


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 162 NKKVFVNICQTDAIPCP 212
           NKK++ NI   + IP P
Sbjct: 333 NKKLYYNIINIEQIPVP 349


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 523 RFEIYNKQKVKSNLHLLRKLKAKHCQEVKQLIERMK 630
           R + Y K K K  L     +K  H  E K ++ER K
Sbjct: 49  REQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSK 84


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 DNKKVFVNICQTDAIPCP 212
           +NKK++ NI   + IP P
Sbjct: 322 NNKKLYYNINYIEQIPVP 339


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 344 CGCQSRVLQEN 376
           CGC S +L EN
Sbjct: 305 CGCNSTMLNEN 315


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 344 CGCQSRVLQEN 376
           CGC S +L EN
Sbjct: 305 CGCNSTMLNEN 315


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 529 EIYNKQKVKSNLHLLRKLKAKHCQEV 606
           +I+ ++ + + L L  K  A HCQEV
Sbjct: 27  KIWTEEFLSTILRLDPKFIALHCQEV 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,379
Number of Sequences: 438
Number of extensions: 4444
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)