Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24k06
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 80 9e-16
05_03_0003 - 7298555-7298841,7299199-7299386,7299484-7299683,729... 73 1e-13
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 30 1.3
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 29 2.2
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 29 2.2
01_01_1126 + 8925685-8925745,8926178-8926343,8927135-8927585,892... 29 2.2
11_04_0097 + 13448740-13450725 28 3.9
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 28 3.9
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 27 6.8
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259... 27 9.0
10_06_0079 + 10429217-10429444,10430058-10430303,10430701-104307... 27 9.0
04_04_0021 - 22192869-22192936,22193232-22193298,22193484-221935... 27 9.0
01_07_0314 - 42688284-42688517,42688587-42688655,42688881-426890... 27 9.0
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 80.2 bits (189), Expect = 9e-16
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Frame = +2
Query: 56 ITLVTVFILSCKLSQLSASEGDRLYIYKDCLKRCISR-NCDENGLLFRQNTT-------- 208
+ L+ + ++ L ASEGD +Y+ C+ C + E + Q T
Sbjct: 9 VALLVGLAAAAVVATLGASEGDADPLYRACVDECEKTGSLRETSVRHCQVPTDDHPADKS 68
Query: 209 --IQQDFWCRLFSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASV 382
+ + + W C EC+YHCM + E G VK+HGKWP KR QEP S
Sbjct: 69 WYAHEPLYLQWKEWNCKSECRYHCMMERESEREQLGLGSVKYHGKWPMKRASVFQEPISA 128
Query: 383 FASLLNLLA--NAYMYSKLRTEFSIKSRPMVL--------LWHLFALVCMNAXVW 517
S L+LL N ++ L + + RP LWH++ L+ MNA W
Sbjct: 129 ALSALSLLVQFNGWLSFFLLLSYKLPLRPETQMTYYEYTGLWHIYGLLAMNAWFW 183
>05_03_0003 -
7298555-7298841,7299199-7299386,7299484-7299683,
7299774-7300038,7302403-7302512
Length = 349
Score = 73.3 bits (172), Expect = 1e-13
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Frame = +2
Query: 62 LVTVFILSCKLSQLSASEGDRLYIYKDCLKRC---------ISRNCDENG---LLFRQNT 205
L + ++ L + AS GD Y+ C++ C I +C G +
Sbjct: 12 LAALLVVGFVLGSVDASLGDVDPQYRTCVEECHTTGIIGENIISHCQSPGNDDASVGSSW 71
Query: 206 TIQQDFWCRLFSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASVF 385
Q+ + + C+++C+Y+CM + ++ G VK+HGKWPF R+ QEP S
Sbjct: 72 YTQEPLYMQWKQLNCMNDCRYYCMMQREGERQSRGLNPVKYHGKWPFIRVSVFQEPLSAA 131
Query: 386 ASLLNLLAN--AYMYSKLRTEFSIKSRPMVL--------LWHLFALVCMNAXVW 517
S +NLL + ++ L + + RP LWH++A++ MNA W
Sbjct: 132 LSAVNLLMHFTGWLSFFLLVNYKLPVRPQTKRTYYEYTGLWHIYAILSMNAWFW 185
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 101 LSASEGDRLYIYKDCLKRCISRNCDENGLLFRQNTTIQQDFWCRL 235
++AS G+ +++ C S CD G+ F +I DFW L
Sbjct: 1 MAASHGNAIFVLLLCTLFLPSLACDSGGVKFGYTGSIGPDFWGNL 45
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 489 ANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSCIPIIRLNGHLP 331
+ K S++ G L + L +E M + + K+ D A +CI ++ +GH P
Sbjct: 305 SKKSRSDSAGDALHRLADLRVESMESCSRKVEEDRARSAAACIQLVVADGHNP 357
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 489 ANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSCIPIIRLNGHLP 331
+ K S++ G L + L +E M + + K+ D A +CI ++ +GH P
Sbjct: 194 SKKSRSDSAGDALHRLADLRVELMESRSRKVEEDRARSAAACIQLVVADGHNP 246
>01_01_1126 +
8925685-8925745,8926178-8926343,8927135-8927585,
8927832-8927900,8928067-8928110,8928211-8928355
Length = 311
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 262 ALVYASPTEEPTPEILLYCCILSEQKAIFITIPRYASFETIFIYV 128
A+ + SPTEE + L Y + K++ + + AS++T+F V
Sbjct: 218 AVAFFSPTEEHADKALQYFVSVEPTKSLSLLLRWIASYQTLFTKV 262
>11_04_0097 + 13448740-13450725
Length = 661
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 283 RPHAMILALVYASPTEEPTP 224
RPH +L L A+PT PTP
Sbjct: 19 RPHLRLLCLATATPTPAPTP 38
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 185 LLFRQNTTIQQDFWCRLFSWRCIDECKYHCMWSAVK 292
L +++ TI D C L SWR +C C W V+
Sbjct: 14 LRLKRSFTITNDSQCTLASWRAGTDC---CRWEGVR 46
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 489 ANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSCIPIIRLNGHLP 331
+ K S++ G L + L ++ M + + K+ D A +CI ++ +GH P
Sbjct: 305 SKKSRSDSAGDALHRLADLRVQSMESRSRKVEEDRARSAAACIQLVVADGHNP 357
>10_07_0055 -
12424320-12424899,12424978-12425160,12425810-12425958,
12426339-12426518,12426610-12426729,12427240-12427383,
12427613-12427777,12427879-12428184,12428258-12428621,
12428746-12429074
Length = 839
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 367 LHTHNPFEWPLAMKLDYLPTSIL*FLYSRPHAMI 266
LH + +EWPL K+ L +L + PH I
Sbjct: 506 LHQKSSWEWPLGAKMSVLGCLMLQSILQYPHQYI 539
>10_06_0079 +
10429217-10429444,10430058-10430303,10430701-10430746,
10430796-10431000,10432114-10432225
Length = 278
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 217 LLYCCILSEQKAIFITIPRYAS 152
LLYCC+ + ++ IP YAS
Sbjct: 255 LLYCCLADLEAKKWVDIPEYAS 276
>04_04_0021 -
22192869-22192936,22193232-22193298,22193484-22193585,
22193694-22193807,22194156-22194329,22194835-22195266,
22196328-22196759
Length = 462
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 245 RCIDECKYHCMWSAVKKLENAG 310
R +D+C +C+ S K LENAG
Sbjct: 113 RRLDDCLRYCIVSGKKALENAG 134
>01_07_0314 -
42688284-42688517,42688587-42688655,42688881-42689001,
42689196-42689371,42689473-42689574,42690376-42691320
Length = 548
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 316 SSQVSWQVAIQTDYGYARARIGICISTQFVSKRIHVFQIKDGVFNQI 456
S SW V ++ G RARI +CI K H +GV +
Sbjct: 473 SEMGSWHVPMEEKSGDDRARIWLCIDRTGHCKHPHEAPAANGVVQDV 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,401,106
Number of Sequences: 37544
Number of extensions: 276323
Number of successful extensions: 715
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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