Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24k06
(519 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068718-5|AAC17768.1| 320|Caenorhabditis elegans Hypothetical ... 70 1e-12
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 30 1.1
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 30 1.1
AF250045-1|AAG17620.1| 246|Caenorhabditis elegans thioredoxin-l... 29 2.6
AF125955-2|AAD14719.1| 246|Caenorhabditis elegans Dumpy : short... 29 2.6
Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical pr... 28 4.6
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 6.1
AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical ... 27 6.1
AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical... 27 6.1
AL034393-24|CAA22312.3| 833|Caenorhabditis elegans Hypothetical... 27 6.1
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 6.1
AF003389-8|AAC71131.1| 214|Caenorhabditis elegans Hypothetical ... 27 8.0
>AF068718-5|AAC17768.1| 320|Caenorhabditis elegans Hypothetical
protein R01B10.4 protein.
Length = 320
Score = 69.7 bits (163), Expect = 1e-12
Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
Frame = +2
Query: 62 LVTVFILSCKLSQLSASEGDRLYIYKDCLKRCISR-NCDENGLLFRQNTTIQQD-FWCRL 235
+V +++C + QL AS GDR Y++C + CIS+ NC F + D FWCR
Sbjct: 6 VVGCLLITCFV-QLEASPGDRSIWYQECTQVCISKYNCSTK---FGTLDWARGDCFWCR- 60
Query: 236 FSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRI---MG--MQEPASVFASLLN 400
Y CMW + ++ V +FHGKWPF I G +QEPAS+ SLLN
Sbjct: 61 ----------YDCMWDTIGHFDSNFGVVPQFHGKWPFLAIPLPFGFIIQEPASMIFSLLN 110
Query: 401 LLANAYMYSKLRTEFSIKSRPMVLLWHLFALVCM 502
L +Y LR +++ P +W ++A V M
Sbjct: 111 LFT---VYKMLRRFKKMQNLPNRTMWLVYAHVGM 141
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 314 ADQHSLISLQQTTCNDTCTRLCIAN*RAYTRNPV 213
+D+HS+ SL +TT N T +R I + ++ RN V
Sbjct: 504 SDRHSIGSLDETTSNRTLSRTGIESAASFARNSV 537
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 314 ADQHSLISLQQTTCNDTCTRLCIAN*RAYTRNPV 213
+D+HS+ SL +TT N T +R I + ++ RN V
Sbjct: 504 SDRHSIGSLDETTSNRTLSRTGIESAASFARNSV 537
>AF250045-1|AAG17620.1| 246|Caenorhabditis elegans thioredoxin-like
protein DPY-11 protein.
Length = 246
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 CKEIRECWSASSQVSWQVAIQTDYGYARARIGICISTQFVSKRIH-VFQIKDGVFNQ 453
CK++++ W+A + S + I+ G + +S +F+ + ++ +KDGVF Q
Sbjct: 54 CKDLQKAWNAFADWSDDLGIKV--GEVDVTVNPGLSGRFLVTALPTIYHVKDGVFRQ 108
>AF125955-2|AAD14719.1| 246|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 11 protein.
Length = 246
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 CKEIRECWSASSQVSWQVAIQTDYGYARARIGICISTQFVSKRIH-VFQIKDGVFNQ 453
CK++++ W+A + S + I+ G + +S +F+ + ++ +KDGVF Q
Sbjct: 54 CKDLQKAWNAFADWSDDLGIKV--GEVDVTVNPGLSGRFLVTALPTIYHVKDGVFRQ 108
>Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical
protein F54B11.6 protein.
Length = 183
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 194 RQNTTIQQDFWCRLFSWRCIDECKYHCMWS 283
R+ ++ WC W+C E YHC W+
Sbjct: 114 RELAVAKKKQWC----WQCNSEAIYHCCWN 139
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = -1
Query: 264 LHSSMHRQLKSLHQKSCCIVVFCLNKRPFSSQFLDMHRLRQSL---YMYKRSPSLADN*L 94
LHS RQL S+H + P S L +H ++ L Y +S S N
Sbjct: 1938 LHSEFDRQLHSMHSSNSSWFCRQCGHSPKSEIDLFLHYIQVHLKPAYDKHQSNSFKSNVF 1997
Query: 93 NLQLKINTVTKVIFKDP 43
+L+ I + T F+ P
Sbjct: 1998 HLKCPIRSCTSPEFQSP 2014
>AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical
protein F58D5.6 protein.
Length = 787
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 278 WSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASVFASLLN 400
WS +K +E+ HGK+PF+ + G+ + + L N
Sbjct: 250 WSELKFVESNPTSGAFKHGKYPFRFLSGVLKSRETWTKLAN 290
>AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical
protein Y18D10A.7c protein.
Length = 936
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 277 HAMILALVYASPTEEPTPEILL-YCCILSEQKAIFITIP 164
++MI++ + A+P E+P I+ YC +++ FI IP
Sbjct: 15 NSMIISKIRAAPLEQPWANIVAKYCLFVAKYPWPFIIIP 53
>AL034393-24|CAA22312.3| 833|Caenorhabditis elegans Hypothetical
protein Y18D10A.7a protein.
Length = 833
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 277 HAMILALVYASPTEEPTPEILL-YCCILSEQKAIFITIP 164
++MI++ + A+P E+P I+ YC +++ FI IP
Sbjct: 15 NSMIISKIRAAPLEQPWANIVAKYCLFVAKYPWPFIIIP 53
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = -1
Query: 264 LHSSMHRQLKSLHQKSCCIVVFCLNKRPFSSQFLDMHRLRQSL---YMYKRSPSLADN*L 94
LHS RQL S+H + P S L +H ++ L Y +S S N
Sbjct: 1938 LHSEFDRQLHSMHSSNSSWFCRQCGHSPKSEIDLFLHYIQVHLKPAYDKHQSNSFKSNVF 1997
Query: 93 NLQLKINTVTKVIFKDP 43
+L+ I + T F+ P
Sbjct: 1998 HLKCPIRSCTSPEFQSP 2014
>AF003389-8|AAC71131.1| 214|Caenorhabditis elegans Hypothetical
protein F23H11.1 protein.
Length = 214
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 224 WCRLFSWRCIDECKYHCMWS 283
WC W C +E YHC W+
Sbjct: 150 WC----WSCDNEAIYHCCWN 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,883
Number of Sequences: 27780
Number of extensions: 263284
Number of successful extensions: 648
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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