Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k04
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    32   0.079
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   3.9  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    26   3.9  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   6.9  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   9.1  

>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +3

Query: 402 QTKLNILQRITIEFSDSGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMDIDIISFE 581
           + K+ I  RIT+   +S   +K+  S   K++DI+A+ P   +  Q  CS ++ DI+S +
Sbjct: 59  EQKIKIYSRITLTI-ESMPQNKV-LSNVTKEFDILAIRPIGDRLLQQTCSDLEFDILSID 116


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 384 PKDNNFQTKLNILQRITIEFSDSGIVHKLNRSENIKKYDIIAVIPKTLQAF 536
           PK N   TKL    R+  E ++S +  K+  ++N++K  +    P  ++ F
Sbjct: 200 PKSNAQLTKLEDEARLKAENAESDMHSKIENAQNVQKQLLCIHRPNYIKQF 250


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 198 GFCDLSISKNYDIDKL-HIIEKLGFNTIAINTCLEEGSDEPXXXXXXGDTREIKDFVPPP 374
           GFC+L + K   ++++  +I++L  N  A +     G +        G  +  +  +P  
Sbjct: 310 GFCEL-LDKRIVLEEIIPVIQEL-INDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMF 367

Query: 375 MDLPKDNNFQTKLNILQRITI 437
           ++L KD N + +LNI+ ++ +
Sbjct: 368 LELLKDENPEVRLNIISKLEV 388


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 348 EIKDFVPPPMDLPKDNNFQ 404
           E+ D +P  +DLPKD NFQ
Sbjct: 600 ELLDLLPK-VDLPKDRNFQ 617


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 55   WLYFEIHCFLS 87
            WL+F I+CFLS
Sbjct: 1011 WLFFSINCFLS 1021


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,715
Number of Sequences: 5004
Number of extensions: 43152
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)