Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24k04
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           29   4.1  
11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517...    29   4.1  
04_03_0263 - 13605195-13607366,13607535-13607702                       28   7.1  
10_08_0368 + 17241156-17241308,17243745-17243993,17244104-172442...    27   9.4  
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751...    27   9.4  

>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 450 SGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMD 560
           S IVHKL  S+ +  +D+ ++    L AFQ+   +MD
Sbjct: 241 SPIVHKLQGSDLLTTHDVQSIKDLLLNAFQWPPPNMD 277


>11_01_0643 -
           5174154-5174254,5174296-5174346,5174611-5174739,
           5174869-5175118,5175220-5177157
          Length = 822

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 450 SGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMD 560
           S IVHKL  S+ +  +D+ ++    L AFQ+   +MD
Sbjct: 244 SPIVHKLQGSDLLTTHDVQSIKDLLLNAFQWPPPNMD 280


>04_03_0263 - 13605195-13607366,13607535-13607702
          Length = 779

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 223 LLIDKSQNPQLLDMLNKPPNLLI 155
           LL +K+QN QLLDM++K  N ++
Sbjct: 680 LLREKAQNDQLLDMIDKHSNDMV 702


>10_08_0368 +
           17241156-17241308,17243745-17243993,17244104-17244206,
           17244291-17244390,17244556-17244666,17245302-17245407,
           17245550-17245640,17245951-17246092,17246370-17246517,
           17246597-17246706,17247131-17247287,17247439-17247564,
           17247646-17247786
          Length = 578

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 92  EELKKQCISKYNHTFFA 42
           ++LK+QC+S+ +H FFA
Sbjct: 145 KDLKEQCLSRIDHLFFA 161


>04_03_0258 -
           13573730-13573816,13573881-13574666,13575043-13575126,
           13575254-13575322,13575324-13576228,13576517-13576784
          Length = 732

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 223 LLIDKSQNPQLLDMLNKPPNLLI 155
           LL +K+QN QL+DM++K  N +I
Sbjct: 650 LLCEKAQNNQLIDMVDKHSNDMI 672


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,426
Number of Sequences: 37544
Number of extensions: 220389
Number of successful extensions: 389
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)