Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24j24
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 95 2e-21
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 57 6e-10
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 49 2e-07
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 47 6e-07
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 44 6e-06
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 44 8e-06
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 32 0.020
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 31 0.034
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 31 0.045
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 29 0.24
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 27 0.56
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 0.73
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 1.3
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 25 3.9
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.9
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce... 24 6.8
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 23 9.0
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 23 9.0
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 23 9.0
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 23 9.0
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 23 9.0
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 95.1 bits (226), Expect = 2e-21
Identities = 40/76 (52%), Positives = 62/76 (81%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 280 VIRGNSIIMLESLDRL 327
IRGNS+IM+E+LD++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 57.2 bits (132), Expect = 6e-10
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Frame = +1
Query: 121 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMV 279
+L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 280 VIRGNSIIMLESLD 321
V+RG +++++ +D
Sbjct: 87 VVRGTTLVLIAPMD 100
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 48.8 bits (111), Expect = 2e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSI 300
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 301 IMLESLD 321
+ + +LD
Sbjct: 68 LYVSALD 74
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 47.2 bits (107), Expect = 6e-07
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGN 294
L ++D+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 295 SIIMLESLD 321
++++L LD
Sbjct: 76 NVVLLGELD 84
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 44.0 bits (99), Expect = 6e-06
Identities = 15/45 (33%), Positives = 33/45 (73%)
Frame = +1
Query: 184 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 318
G +RGFD FMN+VLD++V+ + +G ++++G++I +++++
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 43.6 bits (98), Expect = 8e-06
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRG 291
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 292 NSIIML 309
++ M+
Sbjct: 63 ENVAMV 68
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 32.3 bits (70), Expect = 0.020
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Frame = +1
Query: 121 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV---------- 270
++ ++ L++ GR G L FD FMNLVL + +E + ++ NV
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKR 63
Query: 271 --GMVVIRGNSIIML 309
G+V++RG I+ L
Sbjct: 64 MLGLVILRGEFIVSL 78
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.034
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 142 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESL 318
+ + ++L G G L D +MNL L E + DG + + IRGN+I L
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQ 72
Query: 319 DRL 327
D +
Sbjct: 73 DEV 75
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 31.1 bits (67), Expect = 0.045
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSI 300
+ K + L + + + R G L GFD ++N+VL + E + G +++ GN +
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70
Query: 301 IML 309
ML
Sbjct: 71 CML 73
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 28.7 bits (61), Expect = 0.24
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 109 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 240
A P +L + +D+ + +KL R + G L +D +N+VL ++ E
Sbjct: 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.5 bits (58), Expect = 0.56
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 127 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 228
K +D +++++L ++ G+L+ D F+N+ L+
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 0.73
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 221 TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 129
T+ GSKP NT V A S ++ ++MNF
Sbjct: 919 TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 315 RFQHYNTVTTNYHHPNIVTL 256
R Q T+ HHPNI+TL
Sbjct: 67 RLQREVTILRQLHHPNIITL 86
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 24.6 bits (51), Expect = 3.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 118 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 243
PEL K +D + + G G + F+PFM L L ESV++
Sbjct: 195 PELTKLVDFCKNHESTTGHFTIGDEKKFNPFMCLGL-ESVQK 235
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.6 bits (51), Expect = 3.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 282 YHHPNIVTLTVFTLLD*FIKN*IHEWIKTAQHTGNSAT 169
Y+ P + VF L+ F+ +H W K + GN+AT
Sbjct: 185 YYAP--IVFYVFNLMGFFLAA-LHPWTKVVRGDGNAAT 219
>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 97
Score = 23.8 bits (49), Expect = 6.8
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 148 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDRL 327
++++L G G L + MN + + +DG+ +++ V IRG+ I L D L
Sbjct: 16 VTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPDML 75
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 85 KKHITMSKAHPPELKKFMD 141
K H+ K +PPEL+ ++D
Sbjct: 378 KDHLDEYKTYPPELQWYLD 396
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 23.4 bits (48), Expect = 9.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 218 KFMNGSKPRNTPVTARPAFSFIDNFLSMNFFNSGG--XAFDIVMCF 87
+F+NG K + +IDN L+ N + +G A D MCF
Sbjct: 130 QFVNGIKSKYLSKETFLNLDYIDNHLASNEYFAGEQFTAADPQMCF 175
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 242 SSTDSSRTKFMNGSKPRNTPVTARPA 165
+S + F++ +P N P A+PA
Sbjct: 161 ASVQQQQATFVSNGQPHNLPAQAQPA 186
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 87 KAHYNVKSXSTRIEKIHGQKIVNKAE 164
+A + K+ TR+EKIH + V K++
Sbjct: 777 EAKFKNKNPMTRVEKIHLEVAVPKSQ 802
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTG 186
+KK +DK+L + N R V G
Sbjct: 77 IKKILDKRLPMSSNMARTVKG 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,415
Number of Sequences: 5004
Number of extensions: 24632
Number of successful extensions: 96
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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