Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j24
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   0.41 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   3.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   8.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   8.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 172 RAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDRL 327
           R V   + GFDP++    DE +E+  D +   +   +  G +I  L  L ++
Sbjct: 225 RMVDENINGFDPYVKTPNDEELEKPTDKRMFVLAASIKAGYTIDRLYELTKI 276


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 245 VKTVSVTMLGWW*FVVTVL*CW 310
           ++ ++V  L +W F+V+ +  W
Sbjct: 385 IQCLTVVCLAFWSFIVSTILLW 406


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = -1

Query: 141 VHEFFQFWWMXF*HCNVLFKIL*YGINVIVVDFCILDEFPT 19
           +   F  W   F   N ++  + YGI+       +  +FP+
Sbjct: 308 ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPS 348


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 199 FDPFMNLVLDESVE 240
           +DP + LV+DE++E
Sbjct: 195 WDPDVPLVVDENIE 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,656
Number of Sequences: 438
Number of extensions: 1763
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)