Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j22
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   2.4  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.2  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    25   9.8  

>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 382 IILIVLERYHTCTPHLHRECSSI 314
           I LI+++RYH+CT   +R   SI
Sbjct: 38  IALIIIKRYHSCTYQKNRLLRSI 60


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 292 FTSSPYLGSKSRQSHS-NTLSYRKFERVR*FFLPFNKMILCSVGIVAPR 149
           FT +  L    R  +S +TL  ++FE V  F  PFNK+   S  ++ PR
Sbjct: 158 FTLTLILFLPRRNIYSISTLPSQRFEIVTGFLSPFNKLYF-SKSLIVPR 205


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 102 GRSLPSYRRRLPYIFKRGATIPTEHNIILLNGKKN 206
           G  +PS+  R+  I   G   PT  N +L +G+KN
Sbjct: 118 GSPIPSFLNRISRI---GLAFPTITNALLQHGQKN 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,737
Number of Sequences: 5004
Number of extensions: 37907
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)