Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j20
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   6.2  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.2  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   8.2  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.2  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 398  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQA 538
            L+ LI  + I +HN  N    L  ++ + K H   ++G+    +++A
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEA 2426


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 485 LCPGD*YTADQQCFLNCV 432
           L PGD  T DQ+  +NCV
Sbjct: 137 LLPGDLVTVDQKSVMNCV 154


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 371 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 463
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 221  PLFVLRY*YMLISLACCLLVFRFSI*CTV*LLIFSQSHCH*LVTNNALRAPLT 63
            P F L   Y L  L  C L+   S+  TV   I S  + H  +    LRAP++
Sbjct: 940  PYFYLGI-YTLFGLLSCALISLSSLTITVFCAIKSCRYLHDSMVKAVLRAPMS 991


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 303 LSLSNTIIAHKSRESILLSPWAVCINRSFV 214
           + LSN II H+  E ++LS  ++C+  S +
Sbjct: 193 VGLSNRIITHRELEMVILST-SLCVQLSLL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,021
Number of Sequences: 5004
Number of extensions: 50040
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)