Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24j17
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 34 0.015
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 33 0.027
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 30 0.33
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 30 0.33
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.57
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 29 0.57
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 28 1.0
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 28 1.3
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.3
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 27 2.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 2.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.1
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 4.0
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 26 4.0
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 26 5.3
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 5.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.3
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 7.1
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 25 7.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.1
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.1
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.3
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 25 9.3
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.3
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 9.3
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 9.3
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 34.3 bits (75), Expect = 0.015
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Frame = +3
Query: 297 STLQELLDRIDREMGSLKEEKASTERELEQLN------------LPLLVCSECLSNRDGR 440
++LQE + DR++ +E+ + E EL +L L LLV L +D +
Sbjct: 491 TSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLK 550
Query: 441 RSSELTYDLADTELKKELCVTESNKKMLIDRCQSAWEKINKLEVVKFKLQLDLNDKTEAL 620
++ E Y ++ + ++ ES+ C S EKIN+L +L+L LN+ +
Sbjct: 551 QAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKY 610
Query: 621 Q 623
Q
Sbjct: 611 Q 611
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 33.5 bits (73), Expect = 0.027
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Frame = +3
Query: 276 YEIEQWKSTLQELLDRIDREMGSLKEEKASTERE--------LEQLNLPLLVCSECLSNR 431
+E+E + ++ + +RE+ L+E+ AS ER L + N + + L ++
Sbjct: 545 HELETMHRSQRDKQESTERELRLLQEKAASLERNKSSEVSNLLSRYNTEVAHLEDALHSK 604
Query: 432 DGRRSSELTYDLADTELKKELCVTESNKKMLIDRCQSAWEKINKLEVVKFKLQLDLNDKT 611
D R + L +L TE + + E +++ I + + E + +L KLQLD ND
Sbjct: 605 D-RELANLGVELKSTENRYRQLLQEKEEELEIQKA-AVDESLLQLS----KLQLDRNDID 658
Query: 612 EALQIDKDML 641
+A+ D L
Sbjct: 659 QAMDTQIDEL 668
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 29.9 bits (64), Expect = 0.33
Identities = 18/93 (19%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +3
Query: 117 DWDARLYGLQVTADTRRADAFDLRHSAHQLRNET-RIKTEWDSYHNNNRLSARVYEIEQW 293
+ ++R +Q + + + +++ +++ ET R+ T D + AR IEQ
Sbjct: 132 EMNSRFDAVQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQ--KTEARFQSIEQR 189
Query: 294 KSTLQELLDRIDREMGSLKEEKASTERELEQLN 392
+++ + + IDR S+++ S ++++E ++
Sbjct: 190 FNSIDQRFNSIDRRFDSMEQRLDSMDQKMETID 222
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.9 bits (64), Expect = 0.33
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Frame = +3
Query: 225 KTEWDSYHNNNR--LSARVYEIEQWKSTLQELLDRIDREMGSLKEEKASTERELEQLNLP 398
K E +S NN LS + EQ KS LQE + D E+ L + + + E++++ L
Sbjct: 956 KGELESLRENNATVLSEKAEFNEQCKS-LQETIVTKDAELDKLTKYISDYKTEIQEMRLT 1014
Query: 399 LLVCSECLSNRDG-------------RRSSELTYDLAD-TELKKELCVTESNKKMLIDRC 536
+E ++G R +S L D++ + K+EL V + +++ I+
Sbjct: 1015 NQKMNEKSIQQEGSLSESLKRVKKLERENSTLISDVSILKQQKEELSVLKGVQELTINNL 1074
Query: 537 QSAWEKINKLE-----VVKFKLQLD-LNDKTEALQI 626
+ EK+N LE + K K +L+ LNDK + Q+
Sbjct: 1075 E---EKVNYLEADVKQLPKLKKELESLNDKDQLYQL 1107
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.1 bits (62), Expect = 0.57
Identities = 32/147 (21%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Frame = +3
Query: 222 IKTEWDSYHNNNRLSARV-YEIEQWKSTLQELLDRIDREMGSLKEEKASTERELEQLNLP 398
+K E + + N+L + YE K+ +Q LL+ ++ ++ + E+ TER++ + N
Sbjct: 347 LKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSLEGKLQAHLEKFEQTERDISEKNEE 406
Query: 399 L--------LVCSECLSNRDGRRSSELTYDLADTELK----KELCVTESNKKMLIDRCQS 542
+ V ++C S + R+S E + +LK KE + +S + + ++ +
Sbjct: 407 VKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEEQLKFLLNKEKKLKKSIEALSFEKSE- 465
Query: 543 AWEKINKLEVVKFKLQLDLNDKTEALQ 623
A ++ ++ KL ++ D + LQ
Sbjct: 466 AENSLSSHDIDSQKLNSEIADLSLRLQ 492
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/93 (19%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +3
Query: 117 DWDARLYGLQVTADTRRADAFDLRHSAHQLRNET-RIKTEWDSYHNNNRLSARVYEIEQW 293
+ ++R +Q + + + +++ +++ ET R+ T D + AR IEQ
Sbjct: 132 EMNSRFDTVQNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQ--KTEARFQSIEQR 189
Query: 294 KSTLQELLDRIDREMGSLKEEKASTERELEQLN 392
+++ + + IDR S+++ S ++++E ++
Sbjct: 190 FNSIDQRFNSIDRRFDSMEQRLDSMDQKMETID 222
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +3
Query: 288 QWKSTLQELLDRIDREMGSLKEEKASTERELEQL-------NLPLLVCSECLSNRDGRRS 446
+W+S +++ ++DR++ LK + E +L+QL N+ +L +NR G+R
Sbjct: 19 KWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARANRHGKRL 78
Query: 447 SE 452
+E
Sbjct: 79 AE 80
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 312 LLDRIDREMGSLKEEKASTER-ELEQLNLPLLVCSECLS 425
+LD DR + S++ KASTE+ + + + + V SEC+S
Sbjct: 558 VLDVNDRFLRSIEVGKASTEKGHVRKTSFDISVASECMS 596
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Frame = +3
Query: 258 RLSARVYEI-------EQWKSTLQELLDRIDREMGSLKEEKASTERELEQ 386
RL +R++EI EQ + +E + ++ + + E K + ERELEQ
Sbjct: 927 RLESRLFEISKQLDNSEQENNKFRERIAELESHLSNYAEAKLAQERELEQ 976
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 420 DILSRLVEEDSVVQAPFRWKPSLLSNFPFRGQCGQAIL 307
+ +S+ +++DSVV+A PS S FP C QA+L
Sbjct: 137 EAVSKKLKKDSVVKAD----PSNSSTFPISDSCKQALL 170
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 2.3
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Frame = +3
Query: 333 EMGSLKEEKASTERELEQLNLPLLVCSECLSN-RDGRRSSELTYDLADTELKKELCVTES 509
E S KEE +ST+R+L ++ L E L R SE T DTE+ E
Sbjct: 1447 EFNSTKEELSSTQRKLSEIMDILNTTKEELEKVRQNSNKSEGT--SKDTEIPNE--EEME 1502
Query: 510 NKKML---IDRCQSAWEK-INKLEVVKFKLQLDLNDKTEALQ 623
KK++ + R +S K + K E+++ + Q+ L D+ +ALQ
Sbjct: 1503 RKKVMQQEVLRLRSRIAKELQKNELLRKQNQV-LQDQVKALQ 1543
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 273 VYEIEQWKSTLQELLDRIDREMGSLKEEKASTERELEQLNLPLLVCSECLSNRDGRRS 446
+YE+ Q S LQ+ + +++ KE + + RE++ L+ ++ + +RD ++S
Sbjct: 411 IYELRQKVSILQKRIAEESKQLALNKEVRKISSREIKMLDARSMLKNSFDGSRDLQKS 468
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 3.1
Identities = 7/29 (24%), Positives = 20/29 (68%)
Frame = +3
Query: 249 NNNRLSARVYEIEQWKSTLQELLDRIDRE 335
N+N L + ++++ +W+S + LL ++ ++
Sbjct: 3261 NSNGLKSYIFKLRKWRSYFERLLSKVPKK 3289
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.1
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 25/193 (12%)
Frame = +3
Query: 141 LQVTADTRRADAFDLRHSAHQLRNETRIKTEWDSYHNNNRLSARVYEIEQWKSTLQELLD 320
LQ + +RA+ DL+ + +E S N L + +++ + +Q+LLD
Sbjct: 1030 LQTEIEKKRAENDDLQSKLSVVSSEYE-NLLLISSQTNKSLEDKTNQLKYIEKNVQKLLD 1088
Query: 321 RIDR----------EMGSLKEEKASTEREL--------EQLNLPLLVCSECLSNRDG--- 437
D+ + G L EE A + EL +Q +L + D
Sbjct: 1089 EKDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKEKSDALEQ 1148
Query: 438 --RRSSELTYDLADTELKKELCVTESNK--KMLIDRCQSAWEKINKLEVVKFKLQLDLND 605
+EL L + E V E + L D +S + N + V++ L + +ND
Sbjct: 1149 LTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMKKSLSDSDNVISVIRSDL-VRVND 1207
Query: 606 KTEALQIDKDMLS 644
+ + L+ DKD LS
Sbjct: 1208 ELDTLKKDKDSLS 1220
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 219 RIKTEWDSYHNNNR-LSARVYEIEQWKSTLQELLDRIDREMGSLKEEKASTERELEQ 386
R+ +++ Y ++ + L R+ E+++ + + +I+R+M K K S ELE+
Sbjct: 741 RLLSDYQQYKDDVKDLKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEK 797
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 3 VINIFLEIWYFLLLPNILI 59
+I+I+ IW FLLLP I+I
Sbjct: 7 LISIWNAIWNFLLLPEIII 25
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 288 QWKSTLQELLDRIDREMGSLKEEKASTEREL 380
+WK+ L+ L+ +D + G +KE+ S +REL
Sbjct: 12 RWKA-LERQLEMLDLQEGFIKEDCKSLKREL 41
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 465 DRRSTQNFFYRHGWIDILSRLVEEDSVVQAPFRWKP 358
+RRS Y WI +L LVE S + ++P
Sbjct: 335 ERRSFVEVLYADEWISLLDLLVEISSSLPKSLNYRP 370
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.3
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +3
Query: 252 NNRLSARVYEIEQWKSTLQELLDRIDREMGSLKEEKASTERE-LEQLNLPL-LVCSECLS 425
N +S ++ ++E + Q+ DR+ G L + +++ E LE+ L L + L
Sbjct: 886 NRNVSEKMNDLE---NAAQKFFSSPDRKNGYLYPSEHTSKIEYLEKTIEDLKLALQDELK 942
Query: 426 NRDGRRSSELTYDLADTELKKELCVTESNKKMLIDRCQS 542
NR+ +Y+ T+L++++ E + +LID +S
Sbjct: 943 NRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELES 981
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.1
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Frame = -1
Query: 549 PKRIDNDLSTSSCCFLLRKAPF---SIQYRQDRRSTQNFFYRHGWIDILSRL--VEEDS- 388
PK ID D++ S+ L R+ YRQ R FF+RH +D VE +
Sbjct: 134 PKWIDMDIAHSNWNRLSREGVLYGGMKSYRQMCRYFSGFFWRHPLLDPYKYYWRVEPSTK 193
Query: 387 ----VVQAPFRWKPSLLSNFPF---RGQCGQAILGAWTSIVQF 280
V + PFR L + F + GQ + W S ++F
Sbjct: 194 LLCEVNKDPFRQLRLLNKTYGFVITLFEIGQTVPSLWNSTLEF 236
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 273 VYEIEQWKSTLQELLDRIDREMGSLKEEKAST 368
VY I+Q K Q L DR+ +K+E+ S+
Sbjct: 43 VYTIDQVKEAYQVLSSEKDRQQYQIKQEEESS 74
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.1
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = +3
Query: 225 KTEWDSYHNNNRLSARVY---EIEQWKSTLQELLDRIDREMGSLKEEKASTERELEQLNL 395
+ E DS N + +V E E KS +LL ++ ++ SL ++ + + E+E +
Sbjct: 658 EAEVDSLRKENEENKQVIALKESELVKSNDNKLL--LNEQIESLNDQLSQLKTEMESVTT 715
Query: 396 PLLVCSECLSNRDGRRSSELTYDLADTELKKELCVTESNKKM 521
++ LSN R + EL D + +L++ + SN +
Sbjct: 716 SKESLADYLSNLKERHNDEL--DSLNKKLREFEGILSSNSSL 755
>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Frame = +3
Query: 144 QVTADTRRADAFDLRHSAHQL--------RNETRIKTEWDSYHNNNRLSARVYE-IEQWK 296
Q+ + A+A + R+S++ L +E ++ + +N + Y+ IE+
Sbjct: 14 QIRCEREIAEAAEARNSSNSLIVVDEYSKESEDVLENGLEHVQSNEFTESEDYKSIERSL 73
Query: 297 STLQELLDRIDREMGSLKEEKASTERELEQLNL 395
+ + ++ R ++EMGSL+++ + L+ NL
Sbjct: 74 AVTEAVMARFEKEMGSLRDQMNFFHQILDNDNL 106
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 180 DLRHSAHQLRNETRIKTEWDSYHNNNRLSARVYEIEQWKSTLQELLDRIDREMGSLKEEK 359
D S Q R+K E D NN++ A E + WKS EL I+ + L+ +
Sbjct: 614 DKHRSESQAALNRRVKWENDF---NNKIKALREEKKAWKSEESELKSSIESLISQLESIR 670
Query: 360 AS 365
S
Sbjct: 671 NS 672
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.3
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 243 YHNNNRLSARVYEIEQWKSTLQELLDRIDREMGSLKEEKASTERELEQLNLPLLVCSEC- 419
+ + ++L+A+V ++ Q R + GSL + E+ LN+P E
Sbjct: 337 FEDESQLNAQVKNVQAKIRRAQRDQQRQEESEGSLDVTEIDVEQAFPLLNVPDAELDEAG 396
Query: 420 LSNRDGRRSSELTYDLADTELKKELCVTES 509
L + +R + YD A K E + E+
Sbjct: 397 LRQKRHQRLMKANYD-ARVRAKAEKAIEEA 425
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 261 VGYCCGSCPIRS*SSSHFGADGHCASSQKRLLVLYRQSPANRT 133
VG G P+RS SS++FG + +S + V +R+ A T
Sbjct: 489 VGTAMGVAPVRSNSSNNFGQNFFHQTSPQFSAVPHRKVSAQDT 531
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/50 (18%), Positives = 30/50 (60%)
Frame = +3
Query: 246 HNNNRLSARVYEIEQWKSTLQELLDRIDREMGSLKEEKASTERELEQLNL 395
+ ++ + +++ EIE ++ T+ ++ ++ + +++ +RELE+L +
Sbjct: 38 YESSMIQSQIQEIEAFRKTVDDMYEKQKSIRETYEKDINKLKRELEELGV 87
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 408 CSECLSNRDGRRSSELTYDLADT--ELKKELCVTESN-KKMLIDRCQSAWEKINKLEVVK 578
C + + ++ L DL D E+ E+N ++M+ D S K+N +
Sbjct: 991 CRPYMISSSNLATTRLPRDLVDVYETYNIEVVKQETNFREMIFDPSLSVASKMNAYCDMP 1050
Query: 579 FKLQLDLNDK 608
F + L LNDK
Sbjct: 1051 FTMPLSLNDK 1060
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,041
Number of Sequences: 5004
Number of extensions: 51617
Number of successful extensions: 220
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -