Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j14
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    28   1.00 
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    27   1.3  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    26   4.0  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    26   4.0  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.0  

>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 121 ILNNEYNLNDECYKIIKRFAKD 186
           IL NEY  ND C+  I   AKD
Sbjct: 245 ILANEYTFNDPCWSGISETAKD 266


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 269 KKTKPGTVIPRGLKQIVPTNKPKKRKVKLMNWKKYHRLNVIYAFIDELER 418
           KKTK G  + +     +  +  K  K + + W ++HR NV  A ID LE+
Sbjct: 71  KKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHR-NVERAKIDHLEQ 119


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 121 ILNNEYNLNDECYKIIKRFA 180
           IL N Y+ NDE  K+++++A
Sbjct: 155 ILMNSYDTNDETCKVLRKYA 174


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 145 NDECYKIIKRFAKD 186
           NDEC  ++K+F+KD
Sbjct: 271 NDECLPVLKKFSKD 284


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 265 RKENKTRHSHTKRIKTNCSNE*TKEKKSKINELEEIP 375
           +K + +  S T+ IK+  +N   K   S INE ++IP
Sbjct: 859 KKLSHSSASSTRSIKSLLTNANQKHIHSSINETDDIP 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,661
Number of Sequences: 5004
Number of extensions: 40959
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)