Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j14
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    28   4.1  
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    28   5.4  
05_01_0515 + 4343067-4344206,4344293-4344478,4344884-4345018,434...    28   5.4  
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281...    28   5.4  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    27   7.1  

>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 274 FLSELSLSTVFSPYSGIGFQIYIVFGNT 191
           F+S+ SL+ + SP  G GF I+ +FG T
Sbjct: 389 FISKTSLTCLLSP--GCGFNIFRIFGRT 414


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 225 LDSKSTSCSEIPLVFRKTFDNFVALVVEIVFIVEDVSRLCIRSSFFDSTLD 73
           +D    S  E+P   R+ F+N    + +++F+  D +     + FFDSTL+
Sbjct: 354 IDEIQNSMPELPEAKRRRFENMGLSMQDVLFLANDDN----VARFFDSTLE 400


>05_01_0515 +
           4343067-4344206,4344293-4344478,4344884-4345018,
           4346652-4346753,4346973-4347068,4347146-4347238,
           4347351-4347470,4347580-4347612,4347699-4347749,
           4347874-4347952,4348398-4348456
          Length = 697

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 293 IPRGLKQIVPTNKPKKRKVKLMNWKKYH 376
           + +G +Q  P  K K+ +V+ + W+ YH
Sbjct: 470 VEKGKEQEKPVEKGKEEEVEFLEWEHYH 497


>04_01_0223 +
           2813129-2814014,2815928-2816309,2816358-2816459,
           2816727-2817249
          Length = 630

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 338 KRKVKLMNWKKYHRLNVIYAFID 406
           K  V+L+ W+K H + ++Y F+D
Sbjct: 415 KNLVELVGWEKAHTIFLVYEFVD 437


>02_05_0640 -
           30558523-30559027,30559123-30559252,30559388-30559868,
           30560292-30560346,30560537-30560613,30561228-30561315,
           30561490-30561593,30562050-30562231,30562347-30563109,
           30563195-30563438,30564513-30564658,30565158-30565283,
           30565404-30565517,30565595-30565762,30566283-30566528,
           30566605-30566767,30566970-30567064,30567274-30567357,
           30567769-30568055,30568359-30568572,30568923-30569140,
           30569386-30569623,30570312-30571118,30571202-30571301,
           30571694-30571737,30571824-30571973
          Length = 1942

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 428 AICTVSVIGQSVEGRDIKMLKISNSDARNSAIWL 529
           A+ +  +IG++V  R I++L+++NS+ +    WL
Sbjct: 422 AVFSPDMIGEAVADRTIELLRLTNSETQCWQDWL 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,039,834
Number of Sequences: 37544
Number of extensions: 220795
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)