Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j09
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.38 
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   3.5  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   3.5  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    25   6.2  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    25   8.2  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    25   8.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   8.2  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
 Frame = +2

Query: 86   CVADICNNSKQHTLCKFQSETPADHCIQLEITIKNAEDVKAI-LDKINSRRNKVAAGEIR 262
            CV +I N  K  T   F  +    HCI   + +++  ++ ++ LD   SR   +   E +
Sbjct: 1351 CVTEIWNLWKLRTKATFGGQHDFQHCINKRLILEDGCELASVQLDNALSRNCSLFERERQ 1410

Query: 263  SLPPASNMLKLE----WNDELQKSAQRWANQCVKHRAPDIKDVCRD--LGSVS 403
            +L  + N  KLE    +     +  + WA   +       +DV RD  LG  S
Sbjct: 1411 NLYYSDNQ-KLEDLLFYASYPNEKLKDWATDGINAILSRFEDVSRDGPLGKTS 1462


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 287 LKLEWNDELQKSAQRWANQCVKHRAPDIK 373
           L +   D + K+A+ W  +C++H   DI+
Sbjct: 168 LNIHITDAINKAAESWGIRCLRHEIRDIR 196


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 495 TCSSSMYQTSTRDSGVNPGASPCMV-AIFCPTETDPKSRQTSLIS-GALCFTH 343
           T +S M  T +RD  +N   +  +  + FC T  DPK+   S +   A C  H
Sbjct: 58  TEASQMKGTFSRDFSLNEMNNEFITDSFFCTTTPDPKTESPSFVKYNAHCDDH 110


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 134 FQSETPADHCIQLEITIKNAEDVKAILDKINSRRNK 241
           + S T  D   + E+ ++N ++V+   D+I  R+N+
Sbjct: 495 YNSSTSLDSSEESEVDVENKQNVRTKYDRIFERKNQ 530


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 66  NMNARVIVLLIFVITVNNIRYANSSPKL 149
           NM + ++   ++++ ++NIR  N SPK+
Sbjct: 358 NMFSMIVKNSLYIVDISNIRSNNISPKV 385


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 125 LCKFQSETPADHCIQLEITIKNAEDVKAILDKIN 226
           L K+     + H +Q   T+KNA+++  IL  IN
Sbjct: 265 LNKYSWRNVSKHILQQAATVKNADNLAEILLSIN 298


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 300 HSNFSILEAGGRDLISPAATLLRRLFILSK 211
           H + SIL  G R+ I+P   LL R+++  +
Sbjct: 246 HIDTSILGIGERNGITPLGALLARMYVTDR 275


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 515 KFTPSSETGHSHYNYFTQLVW 577
           K+ PS++T  SHY     L W
Sbjct: 234 KYLPSNQTNISHYGTVNGLAW 254


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 367 IGRSMFYTLVRPSLSRFLQFIV 302
           +G+S FY ++R SL+ F Q  +
Sbjct: 837 MGKSFFYKILRSSLASFAQVFI 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,072
Number of Sequences: 5004
Number of extensions: 55066
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)