Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24j09
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0203 + 1469575-1470045 33 0.17
07_01_0199 - 1420982-1421452 33 0.17
07_01_0195 - 1387831-1388301 33 0.17
07_01_0191 - 1354678-1355148 33 0.17
07_01_0187 - 1321525-1321995 33 0.17
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 30 1.2
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 29 2.1
08_01_0680 - 5958066-5960253,5960707-5961503 29 3.6
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484... 28 4.8
11_04_0189 + 14678971-14679007,14679025-14679101,14679366-146794... 28 6.3
11_06_0337 - 22454281-22456399,22458520-22459388 27 8.4
10_02_0150 - 5883942-5884328,5884573-5884677,5885219-5885311,588... 27 8.4
08_01_1029 - 10419090-10419476,10419721-10419822,10420367-104204... 27 8.4
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 27 8.4
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 27 8.4
>07_01_0203 + 1469575-1470045
Length = 156
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/98 (28%), Positives = 43/98 (43%)
Frame = +2
Query: 293 LEWNDELQKSAQRWANQCVKHRAPDIKDVCRDLGSVSVGQNIATIHGDAPGLTPLSLVDV 472
L W+D L AQ +ANQ RA D D + G+N++ + T S VD
Sbjct: 36 LSWDDNLAAYAQGYANQ----RAGDCALRHSDRNNYQYGENLSW-NPSVQAWTAASSVDQ 90
Query: 473 WYMELLHVNVSILGKFTPSSETGHSHYNYFTQLVWADS 586
W E + + +S G + ++TQ+VW D+
Sbjct: 91 WVAEKGSYD------YASNSCVGGAMCGHYTQVVWRDT 122
>07_01_0199 - 1420982-1421452
Length = 156
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/98 (28%), Positives = 43/98 (43%)
Frame = +2
Query: 293 LEWNDELQKSAQRWANQCVKHRAPDIKDVCRDLGSVSVGQNIATIHGDAPGLTPLSLVDV 472
L W+D L AQ +ANQ RA D D + G+N++ + T S VD
Sbjct: 36 LSWDDNLAAYAQGYANQ----RAGDCALRHSDRNNYQYGENLSW-NPSVQAWTAASSVDQ 90
Query: 473 WYMELLHVNVSILGKFTPSSETGHSHYNYFTQLVWADS 586
W E + + +S G + ++TQ+VW D+
Sbjct: 91 WVAEKGSYD------YASNSCVGGAMCGHYTQVVWRDT 122
>07_01_0195 - 1387831-1388301
Length = 156
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/98 (28%), Positives = 43/98 (43%)
Frame = +2
Query: 293 LEWNDELQKSAQRWANQCVKHRAPDIKDVCRDLGSVSVGQNIATIHGDAPGLTPLSLVDV 472
L W+D L AQ +ANQ RA D D + G+N++ + T S VD
Sbjct: 36 LSWDDNLAAYAQGYANQ----RAGDCALRHSDRNNYQYGENLSW-NPSVQAWTAASSVDQ 90
Query: 473 WYMELLHVNVSILGKFTPSSETGHSHYNYFTQLVWADS 586
W E + + +S G + ++TQ+VW D+
Sbjct: 91 WVAEKGSYD------YASNSCVGGAMCGHYTQVVWRDT 122
>07_01_0191 - 1354678-1355148
Length = 156
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/98 (28%), Positives = 43/98 (43%)
Frame = +2
Query: 293 LEWNDELQKSAQRWANQCVKHRAPDIKDVCRDLGSVSVGQNIATIHGDAPGLTPLSLVDV 472
L W+D L AQ +ANQ RA D D + G+N++ + T S VD
Sbjct: 36 LSWDDNLAAYAQGYANQ----RAGDCALRHSDRNNYQYGENLSW-NPSVQAWTAASSVDQ 90
Query: 473 WYMELLHVNVSILGKFTPSSETGHSHYNYFTQLVWADS 586
W E + + +S G + ++TQ+VW D+
Sbjct: 91 WVAEKGSYD------YASNSCVGGAMCGHYTQVVWRDT 122
>07_01_0187 - 1321525-1321995
Length = 156
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/98 (28%), Positives = 43/98 (43%)
Frame = +2
Query: 293 LEWNDELQKSAQRWANQCVKHRAPDIKDVCRDLGSVSVGQNIATIHGDAPGLTPLSLVDV 472
L W+D L AQ +ANQ RA D D + G+N++ + T S VD
Sbjct: 36 LSWDDNLAAYAQGYANQ----RAGDCALRHSDRNNYQYGENLSW-NPSVQAWTAASSVDQ 90
Query: 473 WYMELLHVNVSILGKFTPSSETGHSHYNYFTQLVWADS 586
W E + + +S G + ++TQ+VW D+
Sbjct: 91 WVAEKGSYD------YASNSCVGGAMCGHYTQVVWRDT 122
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 113 KQHTLCKFQSETPADHCIQLEITIKNAEDVKAILDKINSRRNKVAAGEIRSLPPASNMLK 292
KQ T C E+ AD ++ + NAED L+K+N+ + ++P A LK
Sbjct: 330 KQRTTC----ESTADRMNKISLECSNAEDFFQQLNKLNATYEEFVKLGKEAIPLAEKNLK 385
Query: 293 LEWNDELQKS 322
DE +K+
Sbjct: 386 QLLADESEKA 395
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +2
Query: 77 KSYCVADICNNSKQHTLCKFQSETPADHCIQLEITIKNAEDVKAILDKINS 229
+S AD S++ +C+ +++ + ++ E K AED+K+ L K+N+
Sbjct: 310 QSRAEADEIIQSQKSNICELEAQLSEERDLRREERDKAAEDLKSALHKVNA 360
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 266 LPPASNML-KLEWNDELQKSAQRWANQCVKHRAPDIKDVCRD 388
LP S +L KLE DEL + W NQ V+ A DI+D D
Sbjct: 45 LPTMSALLEKLEDADELDPVVKAWRNQ-VREMAYDIEDCIDD 85
>12_01_0591 -
4835894-4836328,4836343-4837882,4838911-4839050,
4840051-4840605
Length = 889
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 218 KINSRRNKVAA--GEIRSLPPASNMLKLEWNDELQKSAQRWANQCVKHRAPDIKDVCRD 388
K+ RN+V + GE+RS+ + KL DEL + W +Q V+ + DI+D D
Sbjct: 27 KLKGVRNEVVSLEGELRSMEAL--LEKLACMDELDVQVKEWRDQ-VREMSYDIEDCIDD 82
>11_04_0189 +
14678971-14679007,14679025-14679101,14679366-14679457,
14679808-14680134,14680515-14680530
Length = 182
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 167 QLEITIKNAEDVKAILDKINSRRNKVAAGEIRSLPPASNMLKLEWNDEL 313
QL T ++++ + K+ ++ K A PP + ++K+ W D+L
Sbjct: 28 QLATTSSYTQEIEVL--KVRNKLTKFGANPTTFEPPNAGLMKIGWEDDL 74
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +2
Query: 233 RNKVAAGEIRSLPPASNMLKLEWNDELQKSAQRWANQCVKHRAPDIKDVCRDLGSVSVGQ 412
++K+ + L L E + L R N C K+ PD+K L + G+
Sbjct: 398 KSKIGKTLDQKLIEVEKALSAELGNNLTTEVVRIINHCYKNLPPDLKTCLLYLSTFPKGR 457
Query: 413 NIA 421
NI+
Sbjct: 458 NIS 460
>10_02_0150 -
5883942-5884328,5884573-5884677,5885219-5885311,
5885394-5885606,5886976-5887005
Length = 275
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 236 NKVAAGEIRSLPPASNMLKLEWNDELQK-SAQRWANQCVKHR 358
N + A E+R+ P S+M EW + S + +C+K++
Sbjct: 47 NGIPANEVRTTSPLSSMTDNEWKQLVDMWSTPKHKEKCIKNK 88
>08_01_1029 -
10419090-10419476,10419721-10419822,10420367-10420459,
10420542-10420754,10421625-10421654
Length = 274
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 236 NKVAAGEIRSLPPASNMLKLEWNDELQK-SAQRWANQCVKHR 358
N + A E+R+ P S+M EW + S + +C+K++
Sbjct: 47 NGIPANEVRTTSPLSSMTDNEWKQLVDMWSTPKHKEKCIKNK 88
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Frame = +2
Query: 368 IKDVCRDLGSVSVGQNIAT-IHGD---APGLTPLSLVDVWYMELLHVNVSI--LGKFTPS 529
+ + + L ++V +I + GD PG TP L+ + ++L+H +++I LG P+
Sbjct: 441 VNTLLKGLEKIAVSADIPMLVCGDFNATPGSTPHGLLAMGKVDLMHPDLAIDPLGILRPA 500
Query: 530 SETGH-----SHYNYFTQLVWA 580
S+ H S Y+ F ++V A
Sbjct: 501 SKLTHQLPLVSAYSSFARMVGA 522
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 305 DELQKSAQRWANQCVKHRAPDIKDVCRD--LGSVSVGQNI 418
DEL K ++ WA + +R P I+ + R LGS+S +++
Sbjct: 188 DELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSV 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,064
Number of Sequences: 37544
Number of extensions: 357224
Number of successful extensions: 968
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -