Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j09
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.8  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   9.0  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   9.0  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 187 FNCYF*LYTMVCRSFGLEF 131
           FN Y+ + T +C  +GL F
Sbjct: 43  FNVYWNVPTFMCHKYGLRF 61


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 131 KFQSETPADHCIQ 169
           +F SE  A HCIQ
Sbjct: 4   EFYSEADASHCIQ 16


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 399 TDPKSRQTSLISGALCFTHWFAH 331
           TD      S+ISGA C+  +  H
Sbjct: 351 TDMWLTMLSMISGATCYALFLGH 373


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 399 TDPKSRQTSLISGALCFTHWFAH 331
           TD      S+ISGA C+  +  H
Sbjct: 319 TDMWLTMLSMISGATCYALFLGH 341


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 140 SETPADHCIQLEITIKNAED 199
           S TPAD  + L    KN++D
Sbjct: 505 SATPADQPLDLSAKPKNSQD 524


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 426 MVAIFCPTETDPKSRQTSL 370
           +VA+F  T  DP +R T L
Sbjct: 13  VVAVFGNTNLDPPTRPTRL 31


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 426 MVAIFCPTETDPKSRQTSL 370
           +VA+F  T  DP +R T L
Sbjct: 14  VVAVFGNTNLDPPTRPTRL 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,196
Number of Sequences: 438
Number of extensions: 3955
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)