Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24j07
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 29 0.43
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 29 0.56
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 28 1.3
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 27 2.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.3
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 27 3.0
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 26 4.0
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 6.9
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 6.9
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 22 8.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.1
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 25 9.1
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 9.1
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce... 25 9.1
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 25 9.1
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 29.5 bits (63), Expect = 0.43
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 270 TKCIEWRPNDLITIDSDTQDQ 332
+KC++W P D IT+DS Q +
Sbjct: 792 SKCLKWDPKDRITVDSALQHE 812
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 29.1 bits (62), Expect = 0.56
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 560 IGHEYLGVSMLEIERILPDSRFRRELHLLVVTGDA 456
+G + LG+SM + R++ DS +R + + V GDA
Sbjct: 324 LGLDKLGISMDKSNRVIMDSEYRTNIPHIRVIGDA 358
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 214 GRPTLVFRSTPSCVNKSLYWS 152
G TLVF STP+ + S YWS
Sbjct: 333 GAATLVFESTPAYPDYSRYWS 353
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -2
Query: 256 CTMQSIPIELKSETGRPTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMT 107
C+ Q+IPI ET ++ S C +++++ N P+L+ + T
Sbjct: 145 CSSQAIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLIPKLLGPLKQST 194
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/98 (18%), Positives = 37/98 (37%)
Frame = +3
Query: 210 RPVSDFNSIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNI 389
R V + + +G + I W PN+ + + D ++ T RQ T+ NI
Sbjct: 196 RQVLNLSYLGAAGVSAATGAVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNI 255
Query: 390 TSDYANLRARIIKIPLDDLKTFRITRNNQQMQFSTKPG 503
+ + + P D ++ + M ++ + G
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETG 293
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 453 FRITRNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLKNHLKTAKTR 593
F+IT Q++ ++ W + + AYLK H+K+ K R
Sbjct: 195 FQITNRATQLRLYSRRRFWNDCSILITNSLGTLNAYLKQHVKSYKQR 241
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 147 LHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADG 269
L +Q KD+ +QDGV +V R N + +C + DG
Sbjct: 165 LLNQLKDILSQDGVFYMVAVAR-----NKLHSICEILQKDG 200
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 61 SNNIEFYAIISWYLNKQSK 5
S N+E A WYL+KQ +
Sbjct: 578 SQNLEVRAFFGWYLSKQKR 596
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 95 G*LYRHHHHH 124
G L+RHHHHH
Sbjct: 476 GSLHRHHHHH 485
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 21.8 bits (44), Expect(2) = 8.9
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = +2
Query: 104 YRHHHHHVYE 133
+ HHHHH ++
Sbjct: 304 HHHHHHHSHD 313
Score = 21.4 bits (43), Expect(2) = 8.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +2
Query: 83 VYFSG*LYRHHHHH 124
++ G + HHHHH
Sbjct: 294 LHHEGHHHHHHHHH 307
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 390 TSDYANLRARIIKIPLDDLKTFRIT-RNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLK 566
+S+YA L + I++ +DD +R+T + +TKP + F F ++F+ +
Sbjct: 1789 SSNYAELFSNQIQLFVDDTNVYRVTIHKTFEGNLTTKP-INGAIFIFNPRTGQLFLKVIH 1847
Query: 567 NHLKTAKTR 593
+ + R
Sbjct: 1848 TSVWAGQKR 1856
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 363 RQRTLSGNITSDYANLRARIIKIPLDDLKT 452
R TL + S+Y NL A + L+DLKT
Sbjct: 168 RDCTLDPALGSEYTNLYAFVDDTALEDLKT 197
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 156 QYKDLFTQDGVLLKTSV--GRPVSDFNSIGMLCIVQNADGTKC 278
+ K + + V L T + GRP+++F S L + +N T+C
Sbjct: 107 ELKSIPVLESVHLHTKLIDGRPITNFASFNFLDLAENKHITEC 149
>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 399 YANLRARIIKIPLDDLKTFRITRNNQQMQFSTKPGVWQN--TFYFQHG 536
Y+ +R L ++ RIT + +++ S K ++QN T Y HG
Sbjct: 72 YSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHG 119
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 500 GSLAEYVLFPTWKRRDIRGLSKESP 574
GSL YV TW R++ G S +SP
Sbjct: 546 GSL-NYVTSSTWARQEHNGFSHQSP 569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,381
Number of Sequences: 5004
Number of extensions: 57419
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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