Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j05
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.55 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    28   0.96 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   3.9  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    25   5.1  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   6.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   6.8  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   9.0  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 243 QTFNESIPRKFIIIFSQLYSTFSHLFNTMLNFKKLFNSSQLIFSLCL 103
           Q + +   +KF  I  ++ ST   L    L   ++FN SQ +F L L
Sbjct: 504 QCWGKIFKKKFTTICERIESTLHELVKASLQTPEVFNISQSLFELFL 550


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -3

Query: 362 YYT*ESLIHSTLGPNSPTGSRWGRAARYVRAQSPPQRNISKLLTN 228
           ++  E L    +G       +W R  +Y++  +PP R  S  +T+
Sbjct: 463 FFKSEKLTEIKIGKWEKIDDKWNRKVQYIKPVAPPYRQTSCYITD 507


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -2

Query: 501 KNCPVFICRELSKKSKSVHVSFNLFTLYACAVVMFLNKKSTEPMVLILHVRKFDSL 334
           K   VF C+E       V  + N FTL A     FL   STE   + + V KFD++
Sbjct: 280 KTTSVFACQEEIDVVVFVVNAENHFTLSATD---FLRNASTEKSHIFIIVNKFDNI 332


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -2

Query: 234 NESIPRKFIIIFSQLYSTFSHLFNTMLN-FKKLFNSSQL-IFSLCL*MNTRRSTTYVNR- 64
           + +IP K +   ++LYS F+++F T LN    L N S + I +  L     R+T +++  
Sbjct: 382 SSNIPTKELSGGARLYSIFNNVFTTALNSIDPLQNLSTVDIRTAILNSTGSRATLFLSEM 441

Query: 63  EFEIALK 43
            F+I +K
Sbjct: 442 AFDILVK 448


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 20  REHGCVQSFSAISNSLFTYVVERLVFIHKHRLK 118
           R++ C+ S   + N+  TYV++  V + +  L+
Sbjct: 387 RKNDCIDSLIELMNTKVTYVIQEAVIVIRDILR 419


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 252 KHIQTFNESIPRKFIIIFSQLYSTFSHLFNTMLNFKKLFNSSQLIFSL 109
           K++ +F   I RKF ++ S   S+F    NT+ N    FNS+  ++ L
Sbjct: 855 KYLSSF---INRKFGVLLS---SSFIQQLNTVENLNLSFNSTDAVYHL 896


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 20  REHGCVQSFSAISNSLFTYVVERLVFIHKHRLKISC-ELLKSFL 148
           +EHG V    A    +      R V++ KH  K S  EL  +FL
Sbjct: 113 QEHGTVTHLDAFGEWIIACTSSRHVYVWKHASKYSVPELHTTFL 156


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 FLKFSIVLNK*LNVLYNCENMIINFRGMDSLK 238
           F+KFS  L +  +V  N    +I   G+D++K
Sbjct: 10  FIKFSFQLFRNYSVCLNSSKSLIRVEGVDAVK 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,277
Number of Sequences: 5004
Number of extensions: 40421
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)