Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j05
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0445 - 23679918-23680282,23680415-23683349                       31   0.55 
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     28   5.2  
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    27   9.0  

>11_06_0445 - 23679918-23680282,23680415-23683349
          Length = 1099

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
 Frame = -2

Query: 483 ICRELSKKSKS-------VHVSFNLFTLYACAVVMFLNKKSTEPMVLILH-VRKFDSLNF 328
           +C+ELS K K+       V VS  +    AC  +MFL K+S    + I H  R+ D +++
Sbjct: 724 LCKELSAKRKTSYILTVVVPVSTIVMITLACVAIMFLKKRSGPERIGINHSFRRLDKISY 783


>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 320 SDPKLSESNFLTCNIKTIGSVDFLFKNITTAQAYNVNKLKLTCTDL 457
           SD +LS+ +FLT  +K     D  F+ +++A AY+  +   TC +L
Sbjct: 241 SDKELSKGDFLT--VKDELFKDESFRRLSSAVAYDGKRNLFTCAEL 284


>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 507 VPKNCPVFICRELSKKSKSVH 445
           +P+ CP   C  L+KK KS+H
Sbjct: 442 LPQLCPSPTCPSLAKKQKSIH 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,567,437
Number of Sequences: 37544
Number of extensions: 222355
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)