Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j03
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    30   1.0  
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378...    28   4.1  
09_04_0644 + 19181335-19184424                                         27   9.5  

>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 7   PDPGSLPLLSRTPSLVVKCDQEGD 78
           P+P S P+LS  PS++ +C Q  D
Sbjct: 290 PEPFSRPILSANPSIIARCLQPSD 313


>05_05_0106 +
           22435192-22435614,22436880-22436968,22437617-22437814,
           22438475-22438679,22438749-22438916,22439095-22439262,
           22439344-22439534,22440776-22440879,22441285-22441298
          Length = 519

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 7   PDPGSLPLLSRTPSLV--VKCDQEGDNTCKILCNALATA 117
           P PGS+    R+P L   ++ D + DN+   +CNA+A A
Sbjct: 114 PAPGSV---YRSPQLYARLRADMDADNSTDAICNAVAIA 149


>09_04_0644 + 19181335-19184424
          Length = 1029

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 5   RQILEVCPYFLEHQVWSSNVIKKE 76
           R I  +CP++ EH VW  N+++KE
Sbjct: 861 RLITPICPHYAEH-VW-RNILRKE 882


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,792
Number of Sequences: 37544
Number of extensions: 183686
Number of successful extensions: 478
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)