Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24j02
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   1.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.3  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   6.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.0  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 211 HEHFSSYCRDYVNVTC 164
           H H  S+CRD++ + C
Sbjct: 373 HSHLQSFCRDWLRIVC 388


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 158  INTSHIDVVATITRKMFVKFXXXXXXXXXXSAGDYSNFAYSVADPYTGDFKN 313
            I T    V+   T +++ K            A D  N++ ++ +PYT DF++
Sbjct: 2818 IVTDSTAVLVMSTGELYTKLLNASINVTILDASDPGNYSNNIENPYTKDFED 2869


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 141 LLLYKPRP-NKISIFNTRKCTHTTCYLNIKNLLA 43
           +L+YK +   + S++N +KC H    +N  N+ A
Sbjct: 1   MLIYKKKNFGRRSVYNLKKCLHKGFQINSCNIKA 34


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 244 DGHKGKDNDELHEHFSSYCRDYVNVTCVDSNNP 146
           DGH   D  E+ EH S     Y N   V+S  P
Sbjct: 47  DGHY--DFPEMTEHHSDRASSYANANNVNSTQP 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,080
Number of Sequences: 5004
Number of extensions: 32942
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)