Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i21
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    36   0.023
05_05_0290 - 23879064-23880035                                         33   0.28 
08_01_0420 + 3726392-3727116,3727450-3727648,3727787-3727879,372...    32   0.49 
03_06_0450 + 34021248-34021595,34023030-34023434,34023779-340241...    31   0.64 
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998...    29   2.6  
07_01_1079 + 9770444-9772756                                           29   4.5  
02_03_0204 - 16369800-16371758,16372260-16372331                       29   4.5  
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    28   6.0  

>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 31/87 (35%), Positives = 42/87 (48%)
 Frame = -1

Query: 678 LKXGDIVVMSKEARLXYHAVPKILPEYHQPWNSDLSELDFNKMPSFMYISNPKETIEAMN 499
           L+ GDIV+M+ EAR  +H VP+I         SD +E                  I A+ 
Sbjct: 277 LRSGDIVLMAGEARECFHGVPRIFT------GSDQAE------------------ISALV 312

Query: 498 ENIENDKWSEFENYIKESRININVRQV 418
             +  +  S   NYI+ SRININ+RQV
Sbjct: 313 PQLSAEDDSFILNYIQNSRININIRQV 339


>05_05_0290 - 23879064-23880035
          Length = 323

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -1

Query: 534 ISNPKETIEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADE 385
           I +P ET+++ +E  +ND   EFE +I+  R    +R+VL+     LAD+
Sbjct: 62  IEHPGETMDSDDE--DNDLGREFEGFIRRHRRASTLRRVLDSIHDDLADD 109


>08_01_0420 +
           3726392-3727116,3727450-3727648,3727787-3727879,
           3728001-3728129,3728445-3728498,3728597-3728674,
           3728773-3728835,3729101-3729213,3729392-3729500
          Length = 520

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 567 LDFNKMPSFMYISNPKETIEAM--NENIENDKWSEFENYIKESRININVRQVLNEKQ 403
           LD    PS   +  P ET+ +   ++N+ ND W  FE +  +  +N  +   LNE++
Sbjct: 408 LDQQAFPSLNGL--PGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERE 462


>03_06_0450 +
           34021248-34021595,34023030-34023434,34023779-34024123,
           34024388-34024663
          Length = 457

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -1

Query: 678 LKXGDIVVMSKEARLXYHAVPKILPEYHQPWNSDLSEL 565
           L+ GD+++   ++RL +H V +I P+    W +D ++L
Sbjct: 408 LESGDVLIFGGKSRLIFHGVSRIKPKTAPNWLTDEAKL 445


>02_04_0318 -
           21999640-21999705,21999706-21999768,21999822-21999884,
           21999938-22000000,22001097-22001141,22001914-22002325,
           22003313-22003475,22004086-22004132,22004458-22004564,
           22004651-22004684,22004754-22004807,22005599-22005723
          Length = 413

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 328 YYFKVPMCF-ARPFLLPRFLCYDFLIAFFCEVVDAVMSVTE 209
           YYF  P+ + A    LP + CY FL    C+V    +S+TE
Sbjct: 362 YYFLNPLPYQAIRLFLPSWHCYYFLNPLPCQVCTTELSLTE 402


>07_01_1079 + 9770444-9772756
          Length = 770

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 621 VPKILPEYHQPWNSDLSELDFNKMPSFMYISNPKETIEAMNENIENDKWSEFENYIKESR 442
           VP +L    +PW   LS    N +     +S+PK      N  ++ D   +F + + ESR
Sbjct: 151 VPGVLKCLEKPWA--LSSASINSL-----VSSPKNVRRTTNREVKKDPIQDFIDKVNESR 203

Query: 441 I 439
           +
Sbjct: 204 L 204


>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 226 VMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVI 110
           ++S T  P   N+++H+ +  ++ S+ PK  N R K ++
Sbjct: 92  MISTTLEPSYNNLSYHLKLCLLYLSVFPKGHNIRRKRIV 130


>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 218 RHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFK 322
           R N I  F E +  K + +EPR   W C    DF+
Sbjct: 242 RRNVIREFKELKELKRMRREPRCTSWFCVADTDFQ 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,867,511
Number of Sequences: 37544
Number of extensions: 272592
Number of successful extensions: 686
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)