Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i16
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    25   4.0  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   5.3  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   5.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   5.3  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    24   9.3  

>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 270 LHEAMQMASELNNYXDPN 323
           LH+A+ + +E+ N+ DPN
Sbjct: 62  LHDAVTIINEMRNWRDPN 79


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 38  IDIFVTNFNLHVLYFLLRSKN 100
           +DI+  NF LHVL+  +  +N
Sbjct: 132 VDIYPINFTLHVLFDPINGEN 152


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 258 GHEKLHEAMQMASELNNYXDPNFVENLQKNDLHK 359
           GH  L EA +      +  + N + +L +NDLH+
Sbjct: 537 GHMSLEEARKKLLNEKDMGELNMIIDLIRNDLHQ 570


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 309 YXDPNFVENLQKNDLHKQEVLAAE 380
           + DP++ EN +K D  K E+L  E
Sbjct: 347 HYDPDYEENEKKYDAIKHEILGEE 370


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 107 C*CFCYVKENTKRVG*NLLQKYLLPK 30
           C C  +V ENT+ +   LLQK  +PK
Sbjct: 227 CDCGLHVCENTRILMYRLLQKPYVPK 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,016
Number of Sequences: 5004
Number of extensions: 19793
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)