Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i15
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    34   0.012
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    34   0.016
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   0.82 
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   2.5  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   4.4  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   5.8  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   7.6  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  

>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 382 GSNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIR 522
           G  I   G D   + D EYPEWLWSL    AP  +      ++  IR
Sbjct: 85  GLCIKAGGVDPVAREDHEYPEWLWSLLDEPAPNSKTARSHARKSAIR 131


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 219 HQRSLLCGCQEDNDGSWR--CDG 281
           HQR L C CQ+ +DGSW   CDG
Sbjct: 115 HQRPLYCICQKPDDGSWMLGCDG 137


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 385 SNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWI 519
           S I    + V I+P +   ++  + N G +  +E LDPE+K  WI
Sbjct: 210 SGIINLTDAVSIEPGTGN-KFTINFNNGKSETLEALDPESKNTWI 253


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 351 CFYRHLFLFHGSEFASFL---LTLSQTHHTSSCRRCLLGSRITSSF 223
           CF  H+FL H SE  SFL   L  +  ++ +    CL  + I  SF
Sbjct: 639 CF--HIFLNHNSELISFLEGILPNASPNYKTLINTCLFEAYIRESF 682


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 555 FIVPPHTGGAHPDPV 511
           F+V P + GAHP PV
Sbjct: 381 FVVGPESAGAHPGPV 395


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 480 HRG-PRSGDKAVLDPGARRRYEEEQ 551
           HRG PR+ D+A+L P  +   +EE+
Sbjct: 795 HRGLPRAVDRAILLPSEKNNLKEEE 819


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 376 VCGSNIYTTGEDVKIKPDSEYPEWLWSL 459
           +CG+  Y   E + +KP ++  +W WSL
Sbjct: 357 LCGTPDYLAPEIISLKPYNKAADW-WSL 383


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 1   DFFSVYYFQNYLKFFLNIVKLQFIARFLLYLNIWLV 108
           +F S  +  + +KF LN  K+ F+  FLL  +++L+
Sbjct: 85  EFISTVF--SIIKFLLNRRKVSFLLSFLLLFSLFLL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,684
Number of Sequences: 5004
Number of extensions: 53074
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)