Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i15
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0851 - 7992158-7992550                                           46   2e-05
01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305     31   0.63 
08_01_0660 + 5704811-5704922,5705349-5705413                           28   4.4  
06_03_0797 - 24697241-24698278                                         28   4.4  
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606...    28   4.4  
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656...    28   4.4  
06_03_0854 + 25400855-25403741,25406174-25407708                       28   5.9  

>12_01_0851 - 7992158-7992550
          Length = 130

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +1

Query: 376 VCGSNIYTTGEDVKIKPDSEYPEWLWSL 459
           V G+NI   G D K++PDSEYPEWLW L
Sbjct: 58  VFGANILKEGSDPKLQPDSEYPEWLWHL 85


>01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305
          Length = 396

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 389 TYTRQVKMSR*SRTVSTQSGCGASTRGLLLASRT*IRRQSSTGSGCAPPV 538
           T T+ + + +    V+TQS  GA T G LL  R   RRQ     G + P+
Sbjct: 200 TATKIMDVLQRGGAVATQSIAGADTNGSLLCIRKHRRRQDDRSGGASGPI 249


>08_01_0660 + 5704811-5704922,5705349-5705413
          Length = 58

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 246 QEDNDGSWRCDGSGKG*EESWQTHCHGKERDAC 344
           +++  G W   G+G+  +E+  T CH  E  +C
Sbjct: 15  KDEEKGVWEQAGTGEAEDENGTTGCHVSENHSC 47


>06_03_0797 - 24697241-24698278
          Length = 345

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 365 WSTTYVAPTYTRQVKMSR*SRTVSTQSGCGAS 460
           WST   +P+YT+    +    TV T+S CG S
Sbjct: 85  WSTYTYSPSYTKNKCAASTLPTVQTESKCGRS 116


>03_05_1011 +
           29658144-29658310,29659531-29659676,29660526-29660602,
           29660682-29660804,29661817-29661924,29661995-29662075,
           29662157-29662309,29662469-29662540,29662745-29662863,
           29662958-29663071,29663176-29663221,29664865-29664933,
           29665662-29665808,29666410-29666706
          Length = 572

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 524 TRIQYCFVSGSRSSMRGAAPVLRLHNHSGYS-LSGFILTSSPVVYMLEPH 378
           T + Y FV   RS   G   +L L    G S  SG +    P+ Y+LEP+
Sbjct: 66  TELFYYFVESERSPSTGPV-ILWLTGGPGCSGFSGVVFEVGPMKYVLEPY 114


>01_06_0772 -
           31864564-31864653,31864733-31864816,31865547-31865603,
           31865700-31865828,31866704-31866790,31866856-31866933,
           31867150-31867306,31868000-31868141,31868835-31868986,
           31869118-31869371,31869819-31869896
          Length = 435

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 37  KFFLNIVKLQFIARFLLYLN--IWLVTESKNKKY*HQXKMYSGMLQQLLPLRSMLTTQLA 210
           K    ++K Q    + LY+   +W +   K K Y +Q K Y+     LL + +  +  +A
Sbjct: 142 KVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFKQYAWTHMILLTVFAQSSFTVA 201

Query: 211 N 213
           N
Sbjct: 202 N 202


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 409 DVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVR 528
           +V++ P  E   W       AA   E++DPETK   +RVR
Sbjct: 93  EVRVVPAVERRRWR---RQAAAEEWEEIDPETKYRGVRVR 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,358
Number of Sequences: 37544
Number of extensions: 387971
Number of successful extensions: 1006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)