Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i15
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 197 LHN*QISTPKELVMRLPRRQR 259
           LHN    TP+E+   + RR R
Sbjct: 429 LHNFTTMTPQEIAQWIDRRSR 449


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 82  LLYLNIWLVTESKNKKY*HQXKMYSGMLQQLLP 180
           +L  N+WL  E ++ K+      Y G+ +  +P
Sbjct: 66  ILTTNVWLEHEWQDHKFQWDPAEYGGVTELYVP 98


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 439 PEWLWSLNTGAAPRIEDLDPETK 507
           PE+ W   TG+ P +    P T+
Sbjct: 267 PEYRWYAQTGSEPMLVLSGPRTR 289


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 439 PEWLWSLNTGAAPRIEDLDPETK 507
           PE+ W   TG+ P +    P T+
Sbjct: 267 PEYRWYAQTGSEPMLVLSGPRTR 289


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 426 RLYLDIFTCRVYVGATYVVDQ 364
           RL+L IFT  V VG   ++ Q
Sbjct: 520 RLFLWIFTLAVLVGTAGIILQ 540


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 426 RLYLDIFTCRVYVGATYVVDQ 364
           RL+L IFT  V VG   ++ Q
Sbjct: 520 RLFLWIFTLAVLVGTAGIILQ 540


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 426 RLYLDIFTCRVYVGATYVVDQ 364
           RL+L IFT  V VG   ++ Q
Sbjct: 515 RLFLWIFTLAVVVGTAGIILQ 535


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +1

Query: 436 YPEWLWSLN 462
           YP+W W+ N
Sbjct: 105 YPDWTWAKN 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,323
Number of Sequences: 438
Number of extensions: 4132
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)