Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i14
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    27   1.6  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   3.7  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   6.5  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    25   8.6  

>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 268 QTMNLNPLI-LANIQGSSYFKVHLFKLKTYHEVVDEIYYQVKHLEPWERGSR 420
           +T++  P + LA IQ      V   +  TY EVV++++ +V+   PW + ++
Sbjct: 31  KTVSATPAVQLAQIQFPLPTLVIPAESTTYREVVEDVFAKVEQEHPWVKETK 82


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 334 LFKLKTYHEVVDEIYYQVKHLEPW 405
           +F    Y +V++E+YY + H + W
Sbjct: 484 IFFASEYLDVINEVYYSLDHGQSW 507


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 544 NGLLQHTDSPYIRALGFMYIRY 609
           NGLL+H +SP+I+  G +   Y
Sbjct: 115 NGLLRHFESPHIQCAGVVVNDY 136


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/77 (22%), Positives = 32/77 (41%)
 Frame = +1

Query: 148 YSYDKYNLNFMMTEIDEFNQYQKSSKTGKQHNVLPIWGNEQTMNLNPLILANIQGSSYFK 327
           ++ ++  L     +++  N Y       +   V  + G+E T+NL    + N  G+   +
Sbjct: 21  WNVEEGTLQLSSQDLESENAYDLKFSQIQSSTVYELTGDE-TLNLKFTCILNGTGAIPHQ 79

Query: 328 VHLFKLKTYHEVVDEIY 378
            HL    T H  +  IY
Sbjct: 80  AHLLLSDTEHPTLAVIY 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,832
Number of Sequences: 5004
Number of extensions: 41468
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)