Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i14
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464...    87   8e-18
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    72   4e-13
03_03_0070 - 14256143-14257492                                         30   1.7  
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529...    29   3.8  
05_06_0146 - 25983041-25983802                                         28   6.7  
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008...    27   8.9  
03_03_0067 + 14230211-14231506                                         27   8.9  

>05_01_0538 +
           4646772-4647059,4647462-4647542,4647819-4647890,
           4648458-4649321
          Length = 434

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 47/110 (42%), Positives = 62/110 (56%)
 Frame = +1

Query: 280 LNPLILANIQGSSYFKVHLFKLKTYHEVVDEIYYQVKHLEPWERGSRKTSXXXXXXXXXX 459
           +  ++  NI  S YFK  L++LKTYHEV+DEIY QV H+EPW  G+ +            
Sbjct: 14  MEKVLCMNIMSSDYFK-ELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR------------ 60

Query: 460 XXXXXXXXSTAFCXXXXXXXXXXXXXQVNGLLQHTDSPYIRALGFMYIRY 609
                   STAFC             Q++GLL+H DSPYIRA+GF+Y+RY
Sbjct: 61  ------GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRY 104


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 42/106 (39%), Positives = 56/106 (52%)
 Frame = +1

Query: 280 LNPLILANIQGSSYFKVHLFKLKTYHEVVDEIYYQVKHLEPWERGSRKTSXXXXXXXXXX 459
           +  ++  NI  S YFK  L++LKTYHEV+DEIY QV H+EPW  G+ +            
Sbjct: 14  MEKVLSVNILSSDYFK-ELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR------------ 60

Query: 460 XXXXXXXXSTAFCXXXXXXXXXXXXXQVNGLLQHTDSPYIRALGFM 597
                   S+AFC             Q++GLL+H DSPYIRA G +
Sbjct: 61  ------GPSSAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRADGLL 100


>03_03_0070 - 14256143-14257492
          Length = 449

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 508 CRGDRKQWTQFHQHPHLVRRHTCRSGLMSCGYHAPTAQGVSPDNIFR 368
           CR   K W     HP+ +R H  RS +++      TA    PD  FR
Sbjct: 43  CRAVCKAWRSRTSHPYFLRAHAARSRIIAAAVVDTTA---IPDGEFR 86


>02_04_0496 +
           23446039-23446964,23452755-23452845,23452946-23452996,
           23453080-23453206,23453390-23453425,23453443-23453473,
           23453488-23453576,23454341-23454462,23455601-23455778,
           23458343-23458470,23458592-23458658,23459167-23459272,
           23459365-23459473,23459965-23460084,23460187-23460220,
           23460471-23460547,23460640-23460692,23460847-23460898,
           23461270-23461767
          Length = 964

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 508 CRGDRKQWTQFHQHPHLVRRHTCRSGLM 425
           CR    QW + HQHP+  R    R  ++
Sbjct: 138 CRPGDNQWVKLHQHPYQYRNPAHRDAII 165


>05_06_0146 - 25983041-25983802
          Length = 253

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 13  LKHGRRVLCCCQFCEITFVLI 75
           L+  RR LCCC  C  T V++
Sbjct: 47  LRKRRRALCCCGCCVTTLVVV 67


>09_02_0523 +
           10196272-10196375,10196551-10197488,10200247-10200896,
           10201003-10201746
          Length = 811

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +1

Query: 157 DKYNLNFMMTEIDEFNQYQKSSKTGKQHNVLPIWGNEQTMNL------NPLILANIQGSS 318
           D   L  M+ + DE + YQ   K     +V    GN+ T+N+      N   L N QG +
Sbjct: 417 DSLTLTGMLMDADESSAYQPDDKGSFPIHVAAAEGNDGTINILLNKSPNCATLRNAQGRT 476

Query: 319 YFKV 330
           +  +
Sbjct: 477 FLHI 480


>03_03_0067 + 14230211-14231506
          Length = 431

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 508 CRGDRKQWTQFHQHPHLVRRHTCRSGLMS 422
           CR   K W     HP+ +R H  RS +++
Sbjct: 27  CRAVCKAWRSRTSHPYFLRAHAARSRIIA 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,897
Number of Sequences: 37544
Number of extensions: 252101
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)