Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i14
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 76   KLKQM*FHKIDNNIKLGGHVLEID 5
            K  Q  ++++ NN+K GG+ + +D
Sbjct: 1500 KKNQQEWNQVSNNVKPGGNFVVLD 1523


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 423 DIRPDRHVWRRTRCGCWW 476
           ++RP + V   T C C W
Sbjct: 138 EVRPIKRVKDSTNCNCGW 155


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 343 LKTYHEVVDEIYYQVKHLEPW 405
           LK  +  VDE+ + ++ LE W
Sbjct: 293 LKDINRQVDELNFDIQDLERW 313


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 172 NFMMTEID---EFNQYQKSSKTGKQHNVLPIWGNE 267
           +F +T+ D   EFN  +   K  K+  +L IW ++
Sbjct: 8   SFEITDYDLENEFNINRPRRKLSKKQQMLGIWADD 42


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = +3

Query: 24  PPSFMLLSIL*NHICFNLTSISSEIYTTKC 113
           PP+ + + +L  ++ F +  ++  I+ T C
Sbjct: 303 PPTSLAIPLLGKYLLFTMILVTLSIWITVC 332


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 553 LQHTDSPYIRALG 591
           L+H D+P +RA G
Sbjct: 679 LKHNDTPVVRASG 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,876
Number of Sequences: 438
Number of extensions: 2810
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)