Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i09
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0835 - 6315762-6316844                                           27   6.5  
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906...    27   6.5  
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503     27   8.6  

>06_01_0835 - 6315762-6316844
          Length = 360

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 62  FYDTNELHSLTKNKYFYSFTLPQSKYY 142
           FY ++ + + T   + YS  LPQ  YY
Sbjct: 47  FYSSSSISTTTTTPFSYSSPLPQESYY 73


>02_03_0313 -
           17590109-17590148,17590254-17590382,17590479-17590612,
           17590779-17590841,17590920-17591070,17593372-17593424,
           17593483-17593629,17593839-17594163,17594240-17594409,
           17595252-17595453,17596065-17596273,17597051-17597260,
           17597360-17597489,17599664-17600402,17600411-17600531
          Length = 940

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 273 LQEPFDIL-QDLNLCPCCLR 329
           + EPF+ L ++L++CPCC R
Sbjct: 298 MYEPFENLARELHMCPCCQR 317


>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
          Length = 685

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
 Frame = +2

Query: 47  NILTGFYDTNELHSLTKNKYFYSFTLPQS-KYYETKIRFCARVL-RV*IYCVKQEETNKK 220
           ++  GF  T++   L   K F   +  Q  K +E +I+  +R+  R  +  +   ++   
Sbjct: 366 HVYQGFLKTDDQERLVAIKKFSPDSSAQGRKEFEAEIKIISRLRHRNLVQLIGWCDSCMG 425

Query: 221 LSKSYILSSE*SC--HLFKFARTLRYFTRFKFVSVLSKSL 334
           L   Y L SE S   H++K AR L +  R+K +  L  +L
Sbjct: 426 LLIVYELVSEGSLDKHIYKNARLLTWAERYKIIIGLGSAL 465


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,401,784
Number of Sequences: 37544
Number of extensions: 140778
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)