Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i07
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    99   4e-22
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    27   2.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.7  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    26   4.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.3  

>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 99.1 bits (236), Expect = 4e-22
 Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
 Frame = +3

Query: 168 YLLVYNAAQTLGW-SYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNAAVLEILHAAVGL 344
           YL +YN      W S +L   L+  + + T   F  E    V   Q  A+ E+ H+  GL
Sbjct: 9   YLKLYNVISCFLWMSVLLRTGLIWGITKDTAVVF-HETNTLVRWVQTLAIAEVFHSIFGL 67

Query: 345 VPSSVFVVLMQVYSRVFLVCGALLATQGATT-SPGLPLCILAWSITEIIRYAYYALNLVD 521
           V SS    ++QV SR++LV G           SP     I+AWSITEIIRYA+YA NL  
Sbjct: 68  VSSSPLTTIIQVASRLYLVWGVCYPFSYVIEGSPIYLSMIIAWSITEIIRYAFYAFNLNG 127

Query: 522 IVPSSLTFLRYSTFLVMYPLG 584
            +P+ LT+LRY+TFL++YP+G
Sbjct: 128 DIPAFLTWLRYNTFLILYPIG 148


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 416 GNTRSDYKSRVASVYTRLVDN*NHKI 493
           G T S+Y++R+ S+Y  L D  N K+
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKL 198


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 298 NIMTVHLISLQKASKVPRFKKCTNDCHS 215
           NI  VH ++++ A KV R   C  D HS
Sbjct: 335 NIAFVHFLNIRDAIKVVRTLSCDPDYHS 362


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 25/98 (25%), Positives = 40/98 (40%)
 Frame = +3

Query: 282 WTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCI 461
           W  +IF     L +  +   +   SVF V++ +      VC   +   GA  S    +CI
Sbjct: 94  WGPLIFSLVIALALALSTDKIERESVFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCI 153

Query: 462 LAWSITEIIRYAYYALNLVDIVPSSLTFLRYSTFLVMY 575
           L +S   ++     A  +   VP  L F+R    + MY
Sbjct: 154 LGYSSFPLM----IASIVCAFVP--LIFIRIPVIVAMY 185


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 174  EDKSFQSKVQRCCFSLPCWTLFKLI*NFMFKDIF*TKSFTKSSL 43
            EDK   SK  R  +++P W   K++    F+  +   S   S L
Sbjct: 1182 EDKKTLSKEDRSTYAMPLWFQVKMVMTRNFQSYWREPSILMSKL 1225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,257
Number of Sequences: 5004
Number of extensions: 52607
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)