Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i06
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   0.81 
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    27   1.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.3  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   5.7  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   5.7  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   7.5  
SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit l44...    25   7.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   10.0 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   10.0 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   10.0 
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   10.0 
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   10.0 

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 368 VLRTQPPNICDFIAKYLSVL-LITREH 445
           V+RT P NI +F  + LS+L LI R+H
Sbjct: 856 VMRTCPTNILEFYFQQLSILVLIVRQH 882


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 534 LLXIPNW-RRCSDTEGLQSHKSSSIFTARIPCSLVIS 427
           L+    W +  +D EG++S +S+++ TAR+P   V S
Sbjct: 37  LVLFNQWFQEATDDEGIKSPESTTLSTARLPSGRVSS 73


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 354 SDMSSLSPSGSANTLEQPCFWRSSFILPIYIFLRFMAFIL 235
           +D         +  +E  CF+  + I P+Y F+R   F L
Sbjct: 367 NDFMQSEDYAKSEPIEDDCFYLDNVITPLYEFIRDQQFEL 406


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 245 RSFYITGSIYFDFNLTTVIAVNFPFF 168
           R+ YI G I+F   + +++    PFF
Sbjct: 182 RAMYILGFIFFALTIVSIVISCLPFF 207


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 416  LSVLLITREHGI--LAVKILEDLCDCRPSV 499
            +SV+ +  EH I  +++ ILE L DC PS+
Sbjct: 1107 VSVMGLEDEHYIKLVSLSILEKLVDCSPSI 1136


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +1

Query: 103 SGLQSVRVRFSTQYLYLPCFEIKKGKLTAMTVVKLKSK*IEPVM*NERHKPKKYIDW*NE 282
           SG  S  ++F ++YL +   E K+G ++++   K  S+    ++ N   +  + ++W  +
Sbjct: 57  SGTMSTELKFISKYLQISIPETKEGPVSSL--FKAVSEQKPELLGNTDFEKAQILEWTTK 114

Query: 283 RASP 294
             SP
Sbjct: 115 AFSP 118


>SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit
           l44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 154 ASKDTESRIEPEQIANPTRKLTVSCMVLKRRVSRVTRL 41
           ASKDT S+   E +    +KLTV     K  + R+T L
Sbjct: 49  ASKDTNSKPSVEVVYKDGKKLTVD--PTKMNIGRLTEL 84


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 382 LSPEHLSRDIRHEFFESFGKRKHIGTTMFLEKLVHFT 272
           ++PE+L  D+  EFF  F  R+        +++V  T
Sbjct: 685 VTPEYLRTDVLPEFFHCFWSRRMASDRRSYKQVVETT 721


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = -1

Query: 558 TWASTSASLLXIPNWRRCSDT--EGLQSHKSSSIFTARIPCSLVISNTDKYFAIKSHIFG 385
           T  S+S S   IP+    S +    L S  SSS  ++    S +IS++    +  +    
Sbjct: 229 TLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTST-- 286

Query: 384 G*VRSTSLVISDMSSLSPSGSANTLEQPCFWRSSF 280
               S+++  S  SS SP+ +++T+       SSF
Sbjct: 287 ----SSTISSSSSSSSSPTSTSSTISSSSSSSSSF 317


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 272  GKMNELLQKHGCSNVFALPE 331
            G +N L Q H C N   LPE
Sbjct: 3183 GSLNRLPQSHTCFNQLDLPE 3202


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 157 KASKDTESRIEPEQIANPTRKLTVSCM 77
           +  ++ E   E E+I +P  K+T  CM
Sbjct: 132 EGGEEEEEEEEEEEITDPLEKMTQECM 158


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 495 EGLQSHKSSSIFTARIPCSLVISNTDKYFAIKS 397
           + ++SHK+S +   R+P ++++ + D Y   KS
Sbjct: 12  QSIRSHKNSKLENQRLP-AILLHSIDNYIDSKS 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,110
Number of Sequences: 5004
Number of extensions: 47454
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)