Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24i06
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0286 - 2094920-2097805                                           30   1.4  
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458...    29   1.9  

>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -1

Query: 543 SASLLXIPNWRRCSDTEGLQSHKSSSIFTARIPCSLVISNTDKYFAIKSHIFGG*V--RS 370
           + +L  +P+W   S T  +    S ++ T  +P SLV   + ++  + S+   G +    
Sbjct: 460 TGTLGQLPDWLWTSLTSLINLDLSDNLLTGMLPASLVHMKSLQFLGLSSNQLEGQIPDMP 519

Query: 369 TSLVISDMSSLSPSGS 322
            SL + D+S+ S SGS
Sbjct: 520 ESLDLLDLSNNSLSGS 535


>11_01_0574 +
           4582098-4582331,4582450-4582492,4582683-4582757,
           4584344-4584465,4584547-4584654,4585975-4586119,
           4586786-4586869,4586997-4587345,4587527-4587666,
           4587784-4588037,4588409-4588576,4588686-4588976,
           4589329-4589538,4589778-4589860,4590288-4590414,
           4593624-4595516,4596274-4596395,4596487-4596628,
           4596719-4596940,4597489-4597563,4598351-4598452,
           4598616-4598819
          Length = 1730

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 160 NKASKDTESRIEPEQIANPTRKLTVSCMVLKRRVSRVTRLAR 35
           NKA K  E ++ P  +AN       SC V+++ V R T+ A+
Sbjct: 413 NKAKK--EVKVSPSYVANELLAKEFSCAVMEKTVMRETKAAK 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,138
Number of Sequences: 37544
Number of extensions: 281886
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)