Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h22
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   0.69 
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    24   4.9  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 167 LQVTLNLLQDLDLARRPVPRTLGPATLK 84
           L V L  L DL +  RP P  LGP   K
Sbjct: 756 LSVDLATLGDLKVVERPPPMNLGPHAFK 783


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -1

Query: 248 NRPESRHISDPAHIAQLLR*QSACSDCLQVTLNLLQDLDLARRPVPRTLGPATLKFSDCP 69
           + P+SR    P  +   L+   + SD  +  L+L+  +   + P+P T G       +C 
Sbjct: 120 SNPKSRPTLPPGILYAKLKLLDSFSDSEKKRLSLVSFIQTKKVPLPFTYGKFAPDSKECL 179

Query: 68  F 66
           F
Sbjct: 180 F 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,024,828
Number of Sequences: 5004
Number of extensions: 16880
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)