Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h22
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   0.73 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   5.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   5.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          20   6.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   9.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 0.73
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 92  WLGLVSAALACELNPGPGVGSKSPGD 169
           +L   S  LA E    PG GSK P D
Sbjct: 42  FLQCASLKLAFEPRRNPGPGSKGPRD 67


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 140 DLDLARRPVPRT 105
           D D+ +RP+PR+
Sbjct: 923 DSDIRQRPIPRS 934


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 116 LACELNPGP 142
           LAC LNP P
Sbjct: 217 LACPLNPNP 225


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 282 PANCCTT 262
           PA CCTT
Sbjct: 197 PATCCTT 203


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 104 VSAALACELNPGPGVGSKSPGDNHY 178
           ++ A++C + P PG  + S     Y
Sbjct: 1   MATAISCLVAPFPGASANSEAKRLY 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,235
Number of Sequences: 438
Number of extensions: 1243
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)