Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h21
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   0.73 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.8  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 203 TGMQPTHNIADTHALVTAVGTGKGLRPGMA 292
           TG+   H +   H L ++  TG    PG A
Sbjct: 132 TGLHGLHGLHGLHGLSSSAPTGSSCGPGAA 161


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +2

Query: 104 NQKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTA 256
           NQ+    F+ +  H  +    GR+  E    +       + I  TH L TA
Sbjct: 117 NQERFGYFSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQQTHLLQTA 167


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 224 NIADTHALVTAVGTGKGLRPGMANMV 301
           N+   +  V A+GTGK   P  A  V
Sbjct: 158 NVVVAYEPVWAIGTGKTATPQQAQEV 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,928
Number of Sequences: 438
Number of extensions: 2072
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)