Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h19
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...   124   8e-30
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   1.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   5.0  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   5.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.8  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   8.8  

>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score =  124 bits (300), Expect = 8e-30
 Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
 Frame = +3

Query: 15  GQFGIINNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYI 194
           G    IN  RLGRLP+  V+W+EINAAWG TVLLL  L  K++F+   Y+L P+G+ S+I
Sbjct: 294 GSIATINGLRLGRLPSQKVNWAEINAAWGMTVLLLDVLTEKLDFHSSSYQLKPFGSQSFI 353

Query: 195 EVLE----DQKVLP----LYGSGGFRFLWDTKFDAAMVAFLDCLQQFKEQVEMGNTGFCL 350
              +      +V P    L+ SG  +   + +FD  MVAFLD L QF +          L
Sbjct: 354 IRFDRDPNGNQVKPTKLDLFSSGELKIFMNRRFDQGMVAFLDYLHQFGDFCAAKTPSAVL 413

Query: 351 PYRIDKGKIEDTASPPHAYSIKIQFNSEEHWTKALKYMLTNLKWALTWISSQ 506
           PY I+  +I           I++ FN +E+WT+ALK++LT++K+   ++SSQ
Sbjct: 414 PYAIENDRIGGKC-------IRLAFNQDENWTRALKFVLTDIKFLEAYVSSQ 458


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 520 LSSQNCDDIHVKAHFKFVSIYLRALVQCSSELNWIFMEYA 401
           LSSQ C   ++  H      Y+  +VQC  +  W+F+  A
Sbjct: 362 LSSQECPLFYIPYH----DSYIHNVVQCLDDFPWLFLTTA 397


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 231 GSGGFRFLWDTKFDAAMVA 287
           GSG F+  WD  FD++++A
Sbjct: 259 GSGSFKPSWDGSFDSSLMA 277


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 404 RMWWRCCILDFAFVYSVRKTKARITHFHLLLELLQ 300
           R+W   C  + AF+   ++TK + +HF LL++L Q
Sbjct: 137 RLWKEHCGRERAFLRK-KRTKIQCSHFDLLVKLGQ 170


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 105  TVLLLSSLARKINFNFQRYKLVPY-GNHSYIEVLEDQKVLPLYGSGGFRFLWDTKFDAAM 281
            T+  L +    ++F+ +  +L+P    ++++  +E++K    + S       D +     
Sbjct: 1188 TLAKLITSRMSVDFSEKYTQLIPVITTYTHLSEVENKKYSLRFNS--IDEALDVELLNRS 1245

Query: 282  VAFLDCLQQFKEQVEMGNT 338
             AFL CL+  KE  E+G+T
Sbjct: 1246 KAFLFCLEMLKEVKELGST 1264


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 331 PISTCSLNCCRQSKNATIAASNLVSQRNRKPPEPYNGKT 215
           P+   + N   Q+    + A+N+      KP  P NG T
Sbjct: 221 PVPPINSNATAQTAEGHMGATNMTVDNMNKPSIPPNGNT 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,416
Number of Sequences: 5004
Number of extensions: 58979
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)