Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24h19
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574 92 4e-19
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669... 65 5e-11
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 64 8e-11
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 30 1.3
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 29 3.0
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 29 3.0
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 29 3.9
06_01_1073 - 8762470-8762535,8762743-8762814,8762902-8763009,876... 29 3.9
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444... 28 5.2
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 28 5.2
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 28 6.8
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 28 6.8
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 6.8
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 9.0
>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
Length = 602
Score = 91.9 bits (218), Expect = 4e-19
Identities = 55/136 (40%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Frame = +3
Query: 3 ISDSGQFGIINNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQ-RYKLVPYG 179
IS G G INNFRLGRLP V+W EINAAWGQ LLL ++A+ F+ R K+ P G
Sbjct: 376 ISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFTPKFEYRIKIHPMG 435
Query: 180 NHSYIEVLED---QKVLPLYGSGGFRFLWDTKFDAAMVAFLDCLQQFKE---QVEMGNT- 338
+++ + + + + L G W T+FD AM FL CLQ F E ++ N
Sbjct: 436 SYARVTDIHKNTYELYIMLTRFGPVDLFWSTRFDKAMTWFLTCLQDFAEFAISLDKENNV 495
Query: 339 ----GFCLPYRIDKGK 374
LPY+ID K
Sbjct: 496 PPEKSLKLPYKIDGDK 511
>01_06_0272 -
28065896-28065991,28066069-28066227,28066918-28066966,
28067350-28067474,28067834-28068004,28068222-28068571,
28069322-28069478
Length = 368
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/51 (56%), Positives = 34/51 (66%)
Frame = +3
Query: 3 ISDSGQFGIINNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQ 155
IS G G INNFRLGRLP V+W EINAAWGQ LLL ++A+ F+
Sbjct: 316 ISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFTPKFE 366
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = +3
Query: 3 ISDSGQFGIINNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLAR 134
IS G G INNFRLGRLP V+W EINAAWGQ LLL ++A+
Sbjct: 318 ISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQ 361
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +3
Query: 33 NNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLEDQ 212
++FR GR P+ W E AA+ +T + +A K + ++ + G+ S E L D
Sbjct: 417 DHFRQGRAEGEPITWQEFTAAFKKTHIPTGVVALK----KREFRALNQGSRSVTEYLHDF 472
Query: 213 KVLPLYGSGGFR 248
L Y R
Sbjct: 473 NRLARYAPEDIR 484
>05_03_0076 +
8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 99 GQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLEDQ 212
G VL+ +L NFNF+ ++L+ + S I LED+
Sbjct: 469 GGPVLVQLALGTLANFNFKGHELLEFARESVILYLEDE 506
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 150 FQRYKLVPYGNHSYIEVLEDQKVLPLYGSGGFRF 251
+ RYK +P+GN +Y + ED ++ +RF
Sbjct: 95 YHRYKRLPHGNRAYRQGTEDVNLMKSLNFDAYRF 128
>08_02_1102 + 24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 574 FRMRLKNELSIINYCGSDLSSQNCDDIHVKAHFKF 470
F M++ N++ +NY + S D+ + H+KF
Sbjct: 939 FEMKIMNKVGCLNYSATQWESDKPDEYQRQIHYKF 973
>06_01_1073 -
8762470-8762535,8762743-8762814,8762902-8763009,
8763089-8763313
Length = 156
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +3
Query: 195 EVLEDQKVLPLYGSGGFRFLWDTKFDAAMVAFLDCLQQFKEQVEMGNTG-FCLPYRIDKG 371
E +ED+ LY G LW T + + L + E V +G TG F Y + K
Sbjct: 77 EAIEDKPTFLLYSGGAVVALWLTTVVVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKE 136
Query: 372 KIEDTASPPHAYSIKI 419
++ A+ KI
Sbjct: 137 SRKELATDIETLKKKI 152
>03_05_1062 -
30043596-30043811,30044083-30044178,30044387-30044448,
30044990-30045023,30045220-30046173
Length = 453
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -1
Query: 322 TCSLNCCRQSKNATIAASNLVSQRNRKPPEPYNGKTF*SSKTSMYE 185
+C CC+ + +A ++ + ++P NG TF ++SM++
Sbjct: 368 SCVYICCQGKEFVHLAVKQILEKAVKRPCTHINGNTFTFQRSSMHD 413
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -1
Query: 562 LKNELSIINYCGSDLSSQNCDDIHVKAHFKFVSIYLRALVQCSSEL 425
LK++L I++ GS+ ++ + H+ KF+++ L +L +C + L
Sbjct: 258 LKSKLLIVDLAGSERIDKSGSEGHMIEEAKFINLSLTSLGKCINAL 303
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 33 NNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLEDQ 212
++FRL R+ P+ W E AA+ +T + + ++ + ++ + G+ S E L +
Sbjct: 336 DHFRLNRITAEPITWLEFTAAFRKTHI----PSGVVSLKKKEFRSLTQGSRSVTEYLHEF 391
Query: 213 KVLPLY 230
L Y
Sbjct: 392 NRLARY 397
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 33 NNFRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLEDQ 212
++FRL R+ P+ W E AA+ +T + + ++ + ++ + G+ S E L +
Sbjct: 115 DHFRLNRITAEPITWLEFTAAFQKTHI----PSGVVSLKKKEFRSLTQGSRSVTEYLHEF 170
Query: 213 KVLPLY 230
L Y
Sbjct: 171 NRLARY 176
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 387 LYPRFCLCLFCTEDKSPYYPFPLAP*TVAGNLKMRPLPHRIWYPRETGNHPNRITVRLSD 208
L RF +CL D S PF L +V +L + +P IW+ G + VR
Sbjct: 1076 LRQRFPMCLIFGGDGSYMAPFSLHSDSVLTSLMSQAVPSSIWHRLVAGLNAQLRLVRRGS 1135
Query: 207 L 205
L
Sbjct: 1136 L 1136
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 331 PISTCSLNCCRQSKNATIAASNLVSQRNRKPPEPYNGKTF*SSKTSMYE 185
P+ S+N R++ +A SN+ +R + PP P + K+ S T++ E
Sbjct: 1431 PVVRRSMNFVRKADTKDLANSNISVERPKTPPLPLHTKS--SCPTTLLE 1477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,351,901
Number of Sequences: 37544
Number of extensions: 378386
Number of successful extensions: 949
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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