Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24h16
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 42 7e-05
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 37 0.002
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 36 0.006
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 30 0.31
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 28 1.3
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 27 2.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.8
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 5.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 8.8
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 8.8
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 8.8
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 25 8.8
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 41.9 bits (94), Expect = 7e-05
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)
Frame = +2
Query: 65 SFRILGCNPGPMTL--QGTNTYLIGSGKNR--ILVDTGDNNIPEYQKHLSDVVNSEKANI 232
SF+IL P PM + Q YL+ + R +VD + N+ L + +++ ++
Sbjct: 2 SFQIL---PIPMWVGTQDNYAYLLLCEETRQAAIVDPAEVNV--VMPILKKKLKNKEIDL 56
Query: 233 EHIVLTHWHHDHVGGVENIYKTIAKNPIIWKHKKSSEDSADNELPASIPIEWLRDGQEIK 412
+ I+ TH H DH GG N+ K P + + S ++ + L+D + ++
Sbjct: 57 QAILTTHHHADHSGGNLNLKKEF---PHVTIYGGSDQNGVSHV---------LQDKETLR 104
Query: 413 VEGATVKVHHTPGHTTDHIVLTC--LEENILFSGDCILGEGTAVF 541
+ ++ HTP HT D I E+ +F+GD + G F
Sbjct: 105 IGNVQIEALHTPCHTRDSICFYAHSSNEHAVFTGDTLFNAGCGRF 149
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 37.1 bits (82), Expect = 0.002
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 3/147 (2%)
Frame = +2
Query: 110 GTN-TYLIGSGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVEN 286
G N YL+ K +I + + ++ ++++I+ TH H+DH GG E+
Sbjct: 15 GNNYAYLLTCDKTKITAIVDPAEPESVIPVIKEKTAKKEIDLQYILTTHHHYDHAGGNED 74
Query: 287 IYKTIAKNPIIWKHKKSSEDSADNELPASIPIEWLRDGQEIKVEGATVKVHHTPGHTTDH 466
I ++ P + K S P +D + KV V+ HTP HT D
Sbjct: 75 I---LSYFPSL-KVYGGKNASGVTYTP--------KDKEIFKVGEVQVEALHTPCHTQDS 122
Query: 467 I--VLTCLEENILFSGDCILGEGTAVF 541
I ++ + +F+GD + G F
Sbjct: 123 ICYYVSSPSKRAVFTGDTLFTSGCGRF 149
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 35.5 bits (78), Expect = 0.006
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 134 SGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVENIYKTIAK 307
S KN IL+D G+ + + D + E A++ I ++H H DH GV + K K
Sbjct: 536 SMKN-ILLDCGEGTLGRLSRQYGDNLKYEIASLRWIYISHMHADHHAGVIGVLKAWTK 592
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 29.9 bits (64), Expect = 0.31
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +2
Query: 95 PMTLQGTNTYLIGSGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVG 274
P + ++Y + I++D G+ I ++ + ++ I +TH H DH
Sbjct: 420 PTWRRSLSSYSVAIDGTVIMLDCGEGAISQFFRQYGTNTEPMLRKLKAIFITHLHSDHYL 479
Query: 275 GVENI 289
G+ N+
Sbjct: 480 GLLNV 484
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 197 LSDVVNSEKANIEHIVLTHWHHDHVGGVENIYKTIAKNPIIWKHKKSSEDSADN 358
++ V N+E I LT + D + +NIY T +N + K + + E+++ N
Sbjct: 626 ITPVRNTEVQLINTAPLTEYEQDEINNYDNIYFTGLRN--VDKRRSADENTSSN 677
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 131 GSGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVENI 289
G IL+D G + KH V + ++ ++LTH H D + G++++
Sbjct: 62 GDRPKNILIDCGKHFYVSALKHF---VEHKIRYLDAVILTHDHADAINGMDDL 111
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 299 IAKNPIIWKHKKSSEDSADNELPASIPI 382
+AK+ KH S+ED D+ LPA +PI
Sbjct: 1 MAKDKKDHKHSGSTEDEYDSYLPALMPI 28
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 326 HKKSSEDSADNELPASIPIEWLR 394
H K+++ NELP IP WLR
Sbjct: 584 HSKNTDKHVGNELPQDIP-SWLR 605
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 5.1
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 YQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVENIYKTIAKNPIIWKHKKSSEDSADNEL 364
Y +S ++S KA+ V ++ + N T NP EDS DN
Sbjct: 61 YGDSVSPAISSSKAHSTSSVSPYYSEKNESQALNADGTAFANPSFHSFGLPQEDSQDNTQ 120
Query: 365 PASIPIEWLRDGQEI-KVEGATVKVHHT--PGHTTDHIVLTCLEENIL 499
S P + E+ AT + +++ P H++ + NIL
Sbjct: 121 TYSTPYTTMNPSNEMHPYPPATFENNYSVLPDHSSQPNAYSFTGSNIL 168
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 409 NFLSVSKPFYWNRCW*FI 356
NF+S+S P +W R + F+
Sbjct: 217 NFVSISSPEFWERTYMFL 234
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 230 IEHIVLTHWHHDHVGGVENIYK 295
+E L+H+H DH GG+ +K
Sbjct: 208 VEAYFLSHFHSDHYGGLTPKWK 229
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 104 LQGTNTYLIGSGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVE 283
L G+ +L+ K ILVD P+ + LS V N+ + V +H++ +
Sbjct: 874 LSGSGPFLLKHDK--ILVDEKSKTYPKQKSELSTVQNTVLVKADTAVPGVYHYEFTKLSD 931
Query: 284 NIY 292
++Y
Sbjct: 932 SLY 934
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 335 SSEDSADNELPASIP 379
SS DS D ELP SIP
Sbjct: 356 SSGDSTDQELPQSIP 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,325
Number of Sequences: 5004
Number of extensions: 59681
Number of successful extensions: 208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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