Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24h15
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 28 1.2
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 27 1.5
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 2.0
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 27 2.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 3.6
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 26 3.6
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 3.6
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 4.7
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 26 4.7
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch... 26 4.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.7
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 25 6.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.3
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 8.3
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 225 IRNFYPENKNNIYDVLPLLSNERYTSEDSEVSLS 326
I+N+ E K +IY LPL+S E + E E S
Sbjct: 98 IKNY--EEKEHIYTALPLVSKEEFLKEHPEFKSS 129
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/45 (26%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 141 RLSKIICKDNKKDKEFENSNRRNDTGSKIRNFYP-ENKNNIYDVL 272
+++K + K ++ DK+ +N + + ++I+N +P NK+ I+ +L
Sbjct: 269 QMTKSVSKTSQTDKDEDNLDFTKNLLTRIKNLHPLTNKSTIHSLL 313
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 495 TSGSQATASINKCLQQAKKTILKEY 569
+SG Q T S+N L Q +KT+ Y
Sbjct: 822 SSGGQRTTSLNNILMQLRKTLAHPY 846
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 585 SVLAPYILSELFSLLAVSICLWKLL 511
+VL P++LSE S L +S+ W+L+
Sbjct: 301 TVLDPFVLSESASTLNLSLMRWRLV 325
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 3.6
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 135 SSRLSKIICKDNKKDKEFENSNRRNDTGSKIRNFYPENKNNIYDVLP------LLSNERY 296
S+R ++ ++N K++ N + N + + + + N+ + P +LSNE
Sbjct: 457 SNRGEAVLNENNSKNRT--NVTKPNSYKNSVLSIGNNHSNHSNIIKPNTYKNTILSNENN 514
Query: 297 TSEDSEVSLSTSISNSRIDSAR 362
T S V LSTS+ N + S +
Sbjct: 515 TPNYSNVCLSTSLINRSLPSLK 536
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 3.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -1
Query: 75 NGKNRILYLYYFVICGFY 22
NG N ++Y + ++CG Y
Sbjct: 470 NGSNPVMYFFLLMLCGLY 487
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 470 TGQFENSTDVWLTSNSFHKQMLTASKENNSERIYGA 577
T E+ D W +SNS L EN ++G+
Sbjct: 28 TNPLESLRDGWASSNSSSSSSLLLPDENEGNEVFGS 63
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 578 WRRIFFQNCFLCLL*AFVYGSCCL*ARRPSNFRIVQ*SHKNRSFVHIE 435
W R FF F+ + VYGSC + RR +VQ K V E
Sbjct: 222 WFR-FFILFFIIITGTIVYGSCMISVRRNIREEVVQELSKKNGDVDYE 268
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 461 YDFTGQFENS-TDVWLTSNSFHKQMLTASKENNSERI 568
Y T QFEN+ TDV SN+F K T +E E+I
Sbjct: 276 YWHTVQFENNYTDVKSHSNNFAKFKATEKREWVKEKI 312
>SPAC1556.03 |azr1||serine/threonine protein phosphatase
Azr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 111 SPSSCLAIFNYGNGKNRILYL 49
S ++CL +FN GNGK L L
Sbjct: 127 SSTACLTLFNCGNGKLHSLNL 147
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 476 QFENSTDVWLTSNSFH-KQMLTASKENNSERI 568
QFE+++ + ++ NSFH ML+ S +N+ ++
Sbjct: 857 QFEDNSHLRMSINSFHINDMLSKSSRDNNRQL 888
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 588 LSVLAPYILSELFSLLAVSICLWKLLLVSQTSVEFSNC 475
+SVL+ +L L +L+ +++C+ KL S F+ C
Sbjct: 147 VSVLSGVLLISLPTLILLNLCILKLAAKLHLSALFTTC 184
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 171 KKDKEFENSNRRNDTGSKIRNFYPENKNNIY 263
K + + +R+D + +NFYP +N+ Y
Sbjct: 106 KNSQGYRRKPKRDDYNNNRKNFYPPIQNSTY 136
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 248 VFRIEVPYFTSSIVSSITVFKFLIFLVVF--TDNLRQ 144
VFRI +F S+I + IT+ I L+ F DN Q
Sbjct: 395 VFRIPRCFFNSTIATLITIIVIFILLLSFPVIDNREQ 431
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 452 YGFYDFTGQFENSTDVWLTSNSFHKQMLTASKENN 556
Y Y T Q N+T +W +SNS +TA+ N
Sbjct: 913 YPSYSNTTQGMNTTSIWNSSNSTIVSNVTATITGN 947
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 258 YCFCFQDRSSVFYFQYRFVYYC 193
+ CF+ + F F+Y+F +C
Sbjct: 467 FIVCFESETIAFAFKYKFFAFC 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,077
Number of Sequences: 5004
Number of extensions: 53332
Number of successful extensions: 201
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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