Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h15
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0868 - 7200800-7200839,7200974-7201002,7201219-7201224,720...    29   2.1  
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404...    28   4.8  
01_01_0540 + 3957622-3960903                                           28   4.8  
04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329...    28   6.4  
01_06_1509 - 37855894-37856679,37856766-37856952,37857508-378575...    28   6.4  
12_02_0737 + 22662657-22662733,22662843-22662930,22663873-226639...    27   8.5  

>07_01_0868 -
           7200800-7200839,7200974-7201002,7201219-7201224,
           7201656-7201715,7201950-7202025,7203045-7203247
          Length = 137

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 246 FQDRSSVFYFQYRFVYYCFQIPYLSCCLY 160
           F D +S F F+++ + Y  QIP+  CC Y
Sbjct: 103 FDDATSFFNFKFQDINYVIQIPH--CCCY 129


>11_03_0140 -
           10637818-10638059,10638189-10638461,10639963-10640473,
           10640556-10640768,10642717-10642784,10642893-10642958,
           10644862-10644961
          Length = 490

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 204 RNDTGSKIRNFYPENKNN---IYDVLPLLSNERYTSEDSEVSL 323
           ++D   K++NF  EN+ N    YD+  L   + +T +D E +L
Sbjct: 283 KDDNLRKVKNFVDENRANGAGSYDLAMLYPRKVFTEQDMEATL 325


>01_01_0540 + 3957622-3960903
          Length = 1093

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 384  IVWKINCL*LSRSYY*KLMYSKILQNLHLYI 292
            +VW+INC  L   YY  L   ++L +++ Y+
Sbjct: 957  VVWRINCRPLKTGYYAGLTAVRLLPHVYDYV 987


>04_03_0669 +
           18531419-18531820,18532589-18532690,18532882-18532948,
           18533530-18533708,18533792-18534052,18535324-18535407,
           18535517-18535564,18535654-18535718,18536849-18536897,
           18538132-18538372,18539623-18539744,18539942-18540022,
           18540094-18540168,18540408-18540550,18540662-18540812,
           18540915-18541097
          Length = 750

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = +3

Query: 117 FLKCTGSSRLSKIICKDNKKDKEFENSNRRNDTGSKIRNFYPENKNNIYDVLPLLSNERY 296
           F + +G  +   ++ KD+  DK  EN N+++ + SK R    +  +    VL +  +   
Sbjct: 455 FKRNSGLVQSEALLVKDSTSDKADEN-NKKSPSASKKRRNQKKGPSGSKTVLRIDHSYLG 513

Query: 297 TSEDSEVSLSTSISNSRIDSA 359
           +S  S +    S+  S +DSA
Sbjct: 514 SSYHSSIISGFSLIASALDSA 534


>01_06_1509 -
           37855894-37856679,37856766-37856952,37857508-37857580,
           37857772-37857816,37858004-37858010
          Length = 365

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 416 QFKSKSIQCERNYGFYDFTGQFENSTDVWLTSNSFHKQMLTASKENNSERI 568
           Q K +  +  ++    D   +F    D   T+N  HK+ML   +  +SE +
Sbjct: 258 QAKEQQKRKRKDQAIIDLEEEFHKLVDAQNTANEGHKEMLETQRRVSSENV 308


>12_02_0737 +
           22662657-22662733,22662843-22662930,22663873-22663925,
           22664067-22664542,22664645-22664805,22664889-22665086,
           22665324-22665531,22665632-22665756,22665897-22666080,
           22666184-22666344
          Length = 576

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
 Frame = +3

Query: 93  LNKMMDFFFLKCTGSSRLSKIICKDNKKD-KEFENSNRRNDTGSKIRNFYPENK------ 251
           ++ + +F  L  T    L KI+ K   K         ++ D G ++ +F PEN+      
Sbjct: 266 ISNVKEFLRLYYTDEPALRKILIKATDKVWTTIIEHAKKCDPGRELYSFLPENRNVVLFF 325

Query: 252 NNIYDVLPLLSNERYT 299
           N+I+ ++ +++ + YT
Sbjct: 326 NSIHQIVGVITGDHYT 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,443
Number of Sequences: 37544
Number of extensions: 260097
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)