Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h15
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.42 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   0.56 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.7  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   9.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 135 SSRLSKIICKDNKKDKEFENSNRRNDTGSKIRNFYPENKNNI 260
           S R S IIC  NK+ + F   +        I N     +NN+
Sbjct: 347 SVRDSSIICGGNKRSQVFRGRDANRQNSCNIYNASSRMENNL 388


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 159 CKDNKKDKEFENSNRRNDTGSKIRNFYPENKNN 257
           C +N ++   +N+N +ND   K       N+ N
Sbjct: 414 CVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKN 446


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 165 DNKKDKEFENSNRRNDTGSKIRNFYPENKNN 257
           DN+++   +N NR+ND   +  N   +NK N
Sbjct: 462 DNRQNDNKQNGNRQND-NKQNGNRQNDNKQN 491



 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 165 DNKKDKEFENSNRRNDTGSKIRNFYPENKNN 257
           DNK++   +N N++ND   +  N   +NK N
Sbjct: 487 DNKQNGNRQNGNKQND-NKQNGNRQNDNKRN 516


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 367 IYFPNYIVGIHRN 405
           + FP  I+G+H N
Sbjct: 15  VLFPEKIIGLHNN 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,915
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)