Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h10
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.1  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   5.1  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   5.1  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   5.1  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   6.8  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   6.8  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   9.0  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 304  RIASITALAQGPVVDTHVLFGIQENAARWFFPVKPSLAQIHL 429
            RI  +TA  +   +D H+LF  +EN      P++P L  I L
Sbjct: 1068 RIRRMTAWPESDALDKHILF--KENIIP--IPIRPPLVDISL 1105


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 306 PLCKENHSSMVFLREHYWVLHNKPLFPSGVVAASVVHIEVFY 181
           P  +E + ++ FLR  YW L+N P F   +++   +   +FY
Sbjct: 296 PAVQEKYWNVGFLR--YWTLNNIPNFLFALLSIIPILFALFY 335


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 87  NSGKMSVLPRGIENCRPIARYGYVTAESSIYN 182
           N+   SV+P    +  P ARY  ++  +++Y+
Sbjct: 328 NNSNPSVIPESTSSREPAARYRKISERNAVYD 359


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 266 GNITGSSTISRCFPLVWLRPRLSTSRSFIVNATFSCYISIPCNWPTVFNTSWQ 108
           G ++GS+  +  FPL  +R RL T  +    AT+  +I   C + T  N  ++
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPATYDGFID--CFYKTTKNEGFR 392


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 NHGACTRPSGRYARTVWYPGECCPVVFPC 401
           N+GAC      +    W+   CC  V+PC
Sbjct: 325 NNGACEHYKKSFR---WFRFSCCDRVYPC 350


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 165 ESSIYNKRPRCGQPRPQPHQRETT 236
           ESSI N RPR  +   + H RE +
Sbjct: 640 ESSIENHRPRYSRQNSESHLRENS 663


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 341 WSIRTYCLVSRRMLPGGFSLSSLHLPKSTLP-SMLLPYV 454
           W +  Y  VS  ++   FS  ++H+PKS++P +++L YV
Sbjct: 62  WQVLMY--VSSVLMLILFSWLAIHIPKSSVPHALILFYV 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,812
Number of Sequences: 5004
Number of extensions: 43415
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)